W0171
Twinning versus Non-Crystallographic Symmetry: Problems in
Solving the Structure of RbsA AMPPNP Mg2+. Matthew C.
Clifton†, Huide Zhang‡, Shelley Armstrong†, Mark A.
Hermodson‡, Cynthia V. Stauffacher†, †Dept. of Biological
Sciences and ‡Dept. of Biochemistry, Purdue Univ., West Lafayette, IN
47907.
Energy-dependent transport of molecules across the membrane is
essential for the cell and has been implicated in a number of diseases. To gain
an understanding of the mechanism of energy-dependent transport, our laboratory
has been investigating the ribose transport complex from E.coli. The
complex contains a membrane protein, RbsC, and RbsA, which contains two ATPase
domains. The structure of the N-terminal half of RbsA containing ADP and
Mg2+ was solved to 1.6Å by MIR phasing. To observe the
structure of RbsA prior to ATP hydrolysis, data has been collected for RbsA
bound to the non-hydrolyzable ATP analog AMPPNP. The new crystals have P222
symmetry, with a=57.28Å, b=91.01Å, and c=111.72Å. Analysis of
the systematic absences indicates a screw axis along the a and c axes. Molecular
replacement was attempted using the CNS suite of programs, but solutions could
never be refined below an Rwork of 40% and an Rfree of
48%. Attempts at obtaining phase information from a MAD data set have also been
unsuccessful using SOLVE. In both cases, it appears as if one molecule in the
asymmetric unit is ordered while the other is disordered. Upon inspection of the
data, intensity distributions suggest that the crystal is twinned. The unit cell
remains the same when processed in a monoclinic setting with β=89.94°.
However, there are no twinning laws for orthorhombic or monoclinic crystals with
the previously mentioned unit cell parameters. Another possibility is an NCS
axis parallel to a crystallographic symmetry axis giving the appearance of a
higher symmetry space group. For this to occur, there would have to be a
21-screw axis perpendicular to the P21 unique axis. Work
has begun to try and resolve the processing problems. Structural comparisons
between the ADP and AMPPNP bound states will allow investigation of potential
changes in the structure of RbsA upon ATP hydrolysis.