
ACA NEWSLETTER - SUMMER 1997
TABLE OF CONTENTS
President's Column
Council News
SIG News
Canadian Division News
Letter to the Editor
E. O. Lawrence Award to Sunil Sinha
Elizabeth Wood Prize to Roald Hoffmann
ACA Publice Service Award to George Brown
Specialist Databases / What's on the Cover
Contibutors/ Exhibitors for St. Louis
Call for Nominations for 1998 Wood Writing Prize
Candidates for 1998 ACA Offices
Hamilton Memorial Scholarship
Pittsburgh Diffraction Society News
Polycrystal Book Service
ACA Corporate Members
West Coast Protein Meeting
Structural Biology Symposium
David Davies Symposium
Mid-Atlantic Protein Meeting
San Diego Continues as NSF Computing Center
CCDC Announcement
Tulinsky Article on the Protein Structure Project
Verner Schomaker (1914-1997)
Calendar of Meetings
Positions Available
ICCD Scholarship
Contributions to the ACA Newsletter may be sent to either of the Co-Editors:
Ron Stenkamp
Dept. of Biol Structure, SM-20.
U. of Washington
Seattle, WA 98195
tel. 206-685-1721
fax 206-543-1524
stenkamp@u.washington.edu
Judith Flippen-Anderson
Code 6030
Naval Research Lab.
Washington, DC 20375
tel. 202-767-3463
fax 202-767-6874
flippen@harker.nrl.navy.mil
Articles by e-mail or on diskettes are especially welcome. Deadlines for newsletter contributions are: February 1, May 1, August 1 and November 1st. Matters pertaining to advertisements, membership inquiries, or use of the ACA mailing list should be addressed to:
Marcia (Vair) Colquhoun, Administrative Manager
American Crystallographic Association
% Hauptman-Woodward Medical Research Institute
73 High Street, Buffalo, NY 14203-0906
phone: 716-856-9600, ext. 321; FAX: 716-852-4846
E-mail marcia@hwi.buffalo.edu
ACA HOME PAGE http://www.hwi.buffalo.edu/ACA/
Contributors to this issue are listed on page 9
ACA Newsletter (ISSN 1058-9945) Number 2, 1997. Published four times per
year in the spring, summer, fall and winter for the membership of the American
Crystallographic Association, P.O. Box 96, Ellicott Station, Buffalo, NY
14205-0096. Membership in the ACA includes a non-deductible charge of $1.75
from membership dues to be applied to a subscription to the ACA Newsletter.
Second-class postage paid at Buffalo, New York. POSTMASTER: Send address
changes to ACA, c/o 73 High St., Buffalo, NY, 14203.
PRESIDENT'S COLUMN
I'm writing this column during the last week of classes, the time when my
department frantically tries to organize the next academic year before we
disperse for various meetings, workshops, conferences and possibly even
a vacation. One committee was wrestling with the department's seminar budget,
and I feared that a possible casualty would be the general seminar. As its
name implies, the general seminar has no special focus, and the topics deal
with chemistry, broadly defined. The last three speakers have been a nuclear
chemist, a materials scientist, and a biochemist. I needn't have worried
about the seminar's future. As one professor put it, "I know what's
going on in my specialty, but at the general seminar I find out what's going
on in related areas. It's almost the only place now where I learn really
new things." In the end, we increased the allotment for the general
seminar even though the increase meant cutting our more specialized seminar
series.
We all value the opportunity to learn outside of our specialties, and the
upcoming annual meeting in St. Louis is a splendid opportunity for such
learning. Every time I check the program on the World Wide Web site, I find
presentations on topics that I would like to understand but don't. We live
in an age when developments in other scientific disciplines very quickly
affect our own. For example, there's no doubt that advances in genomics
or computational techniques will affect pharmaceutical research, but how?
You can get some expert insights in St. Louis. The creative union of ideas
from what were once unrelated areas is characteristic of scientific progress,
and meetings like the ACA annual meeting are a great opportunity to participate
in that process.
Databases are another issue involving the exchange of ideas and information
that the ACA, along with many other scientific, governmental and commercial
organizations, will be addressing. We're all proud of our community's contributions
to some of the world's most useful databases. Crystallographic databases
are consulted not only by crystallographers but by medicinal chemists synthesizing
new pharmaceutical agents, solid state physicists designing new materials,
and computational chemists searching for trends in chemical structure, and
many others. Recently databases have been very much in the news, and issues
about what information belongs in the database, who owns the data, how databases
should be funded, who has access to databases and at what cost, are all
being discussed. The issues are complex and contentious, and satisfactory
answers will undoubtedly take time and require compromise. The ACA is likely
to play a part, albeit a modest one, in the upcoming debates, both as an
independent organization and through the IUCr, the USNCCr, and the Committee
of Scientific Society Presidents. The fundamental issue is the free and
open exchange that is so vital to scientific progress. That free and open
exchange requires both a willingness to deposit data and the ready availability
of data. The ACA Executive Council will be discussing these issues, and
I would encourage interested members to share their ideas.
Finally, the exchange of ideas should involve the largest possible community.
Articles in this newsletter describe the Elizabeth Armstrong Wood Prize
for promoting a wider appreciation of science and Roald Hoffmann, the first
recipient. One of the more pleasurable jobs facing the ACA Executive Council
in the upcoming year is selecting the next recipient, and nominations are
warmly encouraged.
See you in St. Louis.
Jon Clardy
ACA COUNCIL MEETING, MARCH 1997, BUFFALO, NY
Jane Griffin summarized policies for handling ACA funds. The Finance committee
consists of the Treasurer, Financial Advisor and the Past President. Having
three people involved is a good protection for the ACA. The Etter Award
fund for student travel has grown to the point that the first award for
$250 will be given for travel to the St. Louis meeting this July. Bill Duax
gave the ACA Headquarters report. St. Louis meeting preparation is going
well. A total of 4,487 Call for Papers booklets were distributed to scientists
and 438 flyers to potential exhibitors. An electronic version of the Call
was placed on the World Wide Web in December, 1996. There will be 53 sessions
with 172 invited speakers. Letters of solicitation were sent to ACA members
at 90 companies, and commercial donations of $5,100 have been received.
Titles and authors of all 452 submitted papers and 100 abstracts have been
posted to the Web (as of the time of the council meeting - by press time
all abstracts will be on the web). Most abstracts were submitted by e-mail.
George Ferguson reported on Canadian issues (see page 7 for his report).
Jon Clardy summarized the need for a change in the way we go about choosing
meeting sites. Now that the ACA is larger we need to plan further in advance,
in order to negotiate for facilities and coordinate meetings with other
scientific societies. We may wish to choose a standard site for meetings
every third year; this would be more convenient and save money. The Site
Selection committee (consisting of the Administrative Manager, Financial
Advisor and one ACA member chosen by Council) will routinely choose a meeting
site four years in advance. The Vice President will choose the local chair
in collaboration with the Site Selection committee; the Vice President will
choose the program chair, the symposium topic and symposium chair. The 1997
Membership Directory is in press. It will be sent to those who have paid
dues in 1996 or 1997. On next year's dues billing, members will be asked
to tick wheter their address information may be posted on the Web. Carol
Huber sent a letter to the editors of 37 journals that publish crystallographic
results, giving them a copy of the ACA ethics statement. The Council voted
by e-mail to support the American Institute of Physics Public Policy Statement
supporting increased public funding for science. New representatives to
the U.S. National Committee for Crystallography are Jane Griffin (for Carol
Huber) and Virginia Pett (for Penny Codding) since Huber and Codding are
not US residents. US Congressman George Brown (California) will accept the
Public Service Award at the ACA banquet in St. Louis. The Science Writing
Award will be named after Elizabeth A. Wood, former ACA president (1957)
and author of two books, Crystals and Light and Science from an Airplane
Window. The winner of the Science Writing Award is Roald Hoffmann of Cornell
University, co-author of Chemistry Imagined, who will speak at the ACA banquet
in St. Louis. There will be a notice in the Newsletter asking for nominations
for the Elizabeth A. Wood Science Writing Award by October 1 (see p. 13).
Nominations should include titles of books and copies of articles. Council
will choose the recipient at the October meeting. The Fankuchen lecture
will no longer be given at Brooklyn Polytechnic Institute. Rather, in addition
to the ACA meeting award ceremony there will be a lecture at the awardee's
home institution. Please submit ideas for Physics Success Stories to the
committee, which consists of George Ferguson, Louis Delbaere, Steve Ealick
and David Cox. The Polycrystal Book Service is for sale. It is one of the
benefits of ACA membership and it provides an ACA presence at meetings of
other societies. Hauling books to meetings in a van requires energetic and
dedicated labor. S. N. Rao met with Mert and Wade Adams in November, 1996.
He requested further financial information, and will have recommendations
to the ACA Council at the St. Louis meeting.
Virginia B. Pett, Secretary
SIG NEWS
Service SIG Absorption Study
X-ray diffraction studies of compounds containing highly absorbing atoms
are often problematic. If the crystal absorbs an appreciable amount of the
beam, the data are compromised by an amount which is related to "how
much is absorbed", generally determined from the absorption coefficient
and the size and shape of the crystal, i.e. the path length for any individual
x-ray. Unfortunately, the non-uniformity of the x-ray beam is generally
not taken into consideration in these calculations. Various schemes and
software programs have been used to "correct" data for absorption,
but doubts remain about their effectiveness expecially in cases where the
absorption is serious.
Inorganic and organometallic compounds with heavy atoms not only suffer
from absorption but also from twinning, superlattice effects, atomic and
crystallographic defects, and a host of other problems. In many cases, these
structures refine very poorly, a result which is often blamed on absorption
but may, in fact, be for one or more of the above reasons. Because we have
never been able to obtain routine absorption-free data on these materials,
their problems are not often resolved satisfactorily.
With the installation of the Rigaku 2-D image plate system at the APS (designed
by Joe Calabrese), DuPont and its DND-CAT collaborators will be able to
collect nearly absorption-free x-ray data by tuning to very short wavelengths.
One brief data set collected manually using image plates at the NSLS on
a crystal of Sr2IrO4 has shown us that the experiment is feasible if tedious.
Fortunately, the Rigaku system being installed at the APS is totally automated.
A second study at the NSLS on a crystal of Bi4Au2O10 using a Siemens CCD
detector with a wavelength of 0.184 Å clearly showed the benefits
of using short wavelengths even though the supercell structure has proven
elusive.
Not all of our "absorbing" crystals can studied at the APS or
at the other synchrotron sources. First, there isn't enough scheduled beamtime
or appropriate beamlines to handle all of the potential samples. Second,
short-wavelength data collections are limited to materials that have relatively
small unit cells. It would thus be useful to have some basis to decide which
crystals really benefit from short-wavelength synchrotron radiation and
which can/must be done at home institutions with a careful choice of absorption-correction
software.
The main purpose of this study is thus to determine which software programs
(as a function of crystal size, shape and absorption coefficient) can be
reliably used to correct in-house data sets. The plan here is to compare
data sets from the APS with those collected and "corrected" in-house.
While this study could be carried out alone by DuPont personnel, it would
be far more effective (cost/impact/education) if the study could be carried
out by a number of Service SIG collaborators who could evaluate all(?) of
the computer programs which purport to correct for absorption, comparing
the "corrected" data against absorption-free data collected at
the APS. The intention is to choose collaborators who have crystals with
a wide variety of shapes, sizes and absorption coefficients in order to
determine the conditions under which each of the programs is effective and,
more importantly, when it is not effective. To help select suitable collaborators,
I have set up a committee to review proposed crystals for this study: Ken
Haller, Charlotte Stern, Jim Britton. If you are interested in being a collaborator
on this project, please provide the following information to Dick Harlow,
best reached by e-mail at "harlow@esvax.dnet.dupont.com", who
will collect the responses and pass them on to the committee for review.
This notice and questionaire will also be posted on the Service SIG webpage
(http://www.pitt.edu/~geib/aca.html).
Personal information:
Name, address, phone number, and e-mail address.
Crystal information (more than one can be submitted):
Crystal system, space group, unit cell, formula, m, density.
Description of crystal(s), e.g. shape/habit/faces.
Describe present structural situation:
Type of data collection, e.g. instrument, wavelength, number of reflections,
R values, etc.
What's the problem with the present structure? Why is it a good candidate
for a short-wavelength study?
Collaboration potential:
What absorption correction programs do you have available, e.g. psi-scan,
analytical, artifical (DIFABS)?
It is possible that beam non-uniformity (in-house diffractometers) may also
be a major contributor to the systematic errors in the intensity data. You
must be willing to measure the uniformity once the most appropriate technique
has been established (to be discussed by the collaborators). It may be useful
to pass data around among the collaborators to test various correction programs.
Can you read/write CIF files?
While it is possible that selected crystals could be sent to the APS for
data collection, it is MUCH preferred that the collaborators actually visit
the APS and collect their own data (with assistance) since I would like
this to be an educational experience for members of the Service SIG. Can
you get full or partial support for such a trip to the APS?
Dick Harlow
NAME CHANGE FOR SMALL MOLECULE SIG??
The IUCr Commission on Small Molecules has changed their name to the IUCr
Commission on Structural Chemistry. In light of this change, the Small Molecule
SIG has been asked to consider changing its name. The officers of SIG invite
you to be creative and submit your suggestions for a new name. If you do
not think a name change is necessary, let us know that too. Among the suggested
names thus far, Structural Chemistry has the majority with Chemical Crystallography
a close second. All correspondence should be sent to: Jeanette Krause Bauer
Jeanette.Krause@UC.edu FAX: (513) 556-9239 We will be discussing this issue
at the upcoming SIG business meeting in St. Louis. An official ballot vote
will be conducted later in the Fall.
Jeanette A. Krause Bauer
NEWS FROM CANADA
1. The following good news message was received from Brian Powell (powellb@aecl.ca)
concerning the Neutron Program for Materials Research Chalk River Laboratories.
As most of you will already know, finally we have been informed by Minister
Anne McLellan that a funding package has been approved to continue operation
of the Condensed Matter Science (CMS) program (the Chalk River neutron scattering
user program), beyond 1997 March 31. Funding will be provided for three
years, with contributions from Natural Resources Canada, the National Research
Council, NSERC and Industry Canada. Responsibility for the CMS program will
pass from AECL to the National Research Council (NRC) and the program will
become part of the Steacie Institute for Molecular Sciences of NRC. A case
will have to be prepared by NRC for continued funding beyond the three year
bridging period.
The Minister's announcement marked the successful culmination of an intense
campaign to save the CMS program, a campaign waged by a huge number of supporters.
Without the intense lobbying efforts of our many users, collaborators, friends
and allies in many institutions and at many levels, it is doubtful that
the government would have been persuaded to reverse its decision to cease
funding for the program. NCMS sends grateful thanks to everybody who was
involved in the campaign, in whatever role; writing letters of support,
talking to M.P.'s, contacting government officials etc. All these efforts
were essential in generating enough political support within government
to persuade the Minister and her colleagues to find the alternate funding
for CMS. Again, thank you to everyone who contributed their time and effort
to the "Save CMS" campaign
Now that the threat of imminent termination has receded, NCMS scientists
can once more devote their full attention to operating the national user
program. In the next two years we must develop and grow the program so that
an irrefutable case can be made for continued funding beyond the third year
of the bridging period. The spectrometers are all operating, NRU continues
to run on a regular schedule and we are open for business. So send in your
proposals and come to Chalk River once more to do your experiments. I hope
to see you all here in the near future.
2. Cambridge Structural Database (CSD) in Canada
The Department of Chemistry and Biochemistry, University of Guelph, Guelph,
Ontario, Canada N1G 2W1, has been chosen to be the National Affiliated Centre
for the distribution of the CSD CD-ROM disks to Canadian academic users,
effective April 1, 1997. George Ferguson (the Canadian Representative to
the ACA Council) will be looking after the details of site-licenses and
distribution of disks. If you have not already received a notice about this
change and want further information please contact him by e-mail (george@xray.chembio.uoguelph.ca),
tel: (519)824-4120, ext 3548 or FAX (519) 766-1499. The April 1997 release
of the CSD will be mailed to Canadian site-license holders as soon as the
material arrives from Cambridge.
George Ferguson Canadian Representative to the ACA.
THE CANADIAN NATIONAL COMMITTEE FOR THE IUCR
Dr. Suzanne Fortier, Chair
Dept. of Chemistry Queen's University Kingston, Ontario K7L 3N6
phone: (613)545-6933
FAX: (613)545-6934 fortiers@qucdn.queensu.ca
Dr. Isabella Bassignana, Vice-Chair Advanced Technology Lab.
Nortel Technologies
Ottawa, Ont. K1Y 4H7
phone: (613)763-3550
FAX: (613)763-2404
isa@nortel.ca
Dr. Jean-Pierre Charland, Treasurer
DNRC, CANMET,BCC Bldg. 3
Energy Research Labs
555 Booth St.
Ottawa, Ont. K1A 0G1
phone: (613)995-5751
FAX: (613)995-9584
charland@emr.ca
Dr. Joseph Schrag, Secretary
Biotechnology Research Institute
National Research Council of Canada
Montreal, Que. H4P 2R2
phone: (514)496-2557
FAX: (514)496-5143
joe.schrag@nrc.ca
Dr. Francois Brisse
Universite de Montreal
Montreal, Que. H3C 3J7
phone: (514)343-6730
FAX: (514)343-7586
brisse@ere.umontreal.ca
Prof. T. Stanley Cameron
Dept. of Chemistry
Dalhousie University
Halifax, N.S. B3H 4J3
phone: (902)494-3305
FAX: (902)494-1310
cameron@ac.dal.ca
Dr. Randy Read
Medical Microbiol. and Infec. Diseases
University of Alberta
Edmonton, Alta. T6G 2H7
phone: (403)492-4305
FAX: (403)492-7521
rndy@mycroft.mmid.ualberta.ca
Dr. Frank Hawthorne
Dept. of Geological Sciences
University of Manitoba
Winnipeg, Man. R3T 2N2
phone: (204)474-8861
FAX: (204)261-7581
fchawthorn@bldgwall.lan1.umanitoba.ca
Dr. George Ferguson, ex-officio
Chemistry Department
Guelph University
Guelph, Ont. N1G 2W1
phone: (519)824-4120 x3800
FAX: (519)766-1499 george@xray.chembio.uoguelph.ca; ferguson@chembio.ouguelph.ca
LETTERS / NEWS & NOTICES
LETTER TO THE EDITOR - Deposition of Coordinates
I would like to initiate (once again) a discussion about the deposition
of macromolecular coordinates resulting from crystallographic investigations
of proteins and nucleic acids. For the last several years, virtually all
journals publishing macromolecular structures have subscribed to the rules
of the Commission on Biological Molecules of the International Union of
Crystallography (Acta Cryst. (1989) A45, 658), which require concurrent
Protein Data Bank (PDB) deposition of the coordinates, with a possibility
of putting them on hold for up to one year (four years for the primary data,
such as structure factors or NMR assignments). In most cases these rules
are followed faithfully, and even journals which for a long time did not
subscribe to them, such as Nature, have now adopted them. However, structures
not immediately accompanied by coordinates still get published. Since the
latest improvements in the submission process to PDB make it possible to
get an accession code almost immediately upon automated delivery of the
data, the fault must squarely lie with the authors (and with the journal
for not enforcing the rules). Recently, I found papers not accompanied by
coordinates in Cell, Nature, Nature Structural Biology, and Biochemistry.
Letters written to the editors of the former two journals went unanswered,
while the latter two elicited immediate responses, which included contacting
the authors of the offending publications and making them deposit the coordinates.
It is clear that the journals should be asked to do more to police the rules.
If the major journals which publish crystal structures would all agree not
to accept any papers from authors who published there previously, but did
not deposit the coordinates, then the problem would disappear overnight.
I urge the American Crystallographic Association to contact the dozen or
so journals in that category, and to suggest such an enforcement mechanism
of the existing policy. In addition, if we individually write to the editors
when we spot the problem, maybe they will be compelled to act. I feel very
strongly, however, that even the current policy has outlived its usefulness
and should be changed. The screen of secrecy imposed by the allowed delay
in the release of the coordinates is in most cases unnecessary, and often
counterproductive. It appears to me that putting crystallographic coordinates
on hold is currently becoming a status symbol, aimed only to prove that
the deposited structures are really important. How else could we explain
that well over half of all structures now deposited with the PDB are placed
on hold? The process is rapidly reaching a stage of insanity, with, for
example, 19 sets of coordinates of lysozyme currently showing hold status.
If there is a justification for this stage of affairs, I fail to see it.
On the other hand, I can easily identify many cases when early distribution
of the coordinates, even to competing laboratories, has led to great acceleration
of investigations, and ultimately benefitted the original team, even if
indirectly. The two usual explanations for the need to withhold the coordinates
are the desire of the original team to have extra time for full interpretation
of their results, or the need to protect commercially valuable information.
While the former argument could have been true several years ago, modern
methods of structure interpretation make it largely obsolete. The commercial
argument is perhaps valid for research supported by companies, but should
not be invoked for results of research supported by public agencies. Since
the funding agencies, however, have adopted IUCr recommendations, it is
unlikely that they will disallow holds unless these recommendations get
changed. I would thus like to urge ACA to propose a change in the rules
governing deposition of the coordinates, such that the maximum time of the
hold would not exceed three months from the date of publication for the
coordinates, and 1 year for the original data. This short hold would still
allow the authors exclusive time to analyz the results, but would not reduce
the papers to mere advertisements, as is currently often the case when the
coordinates are not available.
Alexander Wlodawer (wlodawer@ncifcrf.gov)
PROCEEDINGS OF CRYSTALLOGRAPHIC COMPUTING 7 ARE ON-LINE.
After a lot of effort the Proceedings of Crystallographic Computing 7 are
on-line. These were the papers presented at the IUCr Macromolecular Computing
School last August. They can be viewed at http://www.sdsc.edu/Xtal/IUCr/CC/School96/
Phil Bourne Chairman, IUCr Computing Commission.
1996 EARNEST O. LAWRENCE AWARD IN MATERIALS RESEARCH TO SUNIL K. SINHA
The Lawrence Award was established in 1959 to honor the memory of the late
Dr. Ernest Orlando Lawrence who invented the cyclotron and after whom two
major DOE laboratories in Berkeley and Livermore, California, are named.
The award is given in seven categories for outstanding contributions in
the field of atomic energy. Dr. Sunil K. Sinha, a senior physicist at Argonne
National Laboratory, was one of the 1996 reciptients of the award.
Dr. Sinha is a leader in the development and use of X-ray and neutron scattering
techniques. In particular, he, and his coworkers developed a general theory
of X-ray and neutron scattering from "rough" surfaces, i.e., real
world surfaces, and then they proceeded to validate this theory by carrying
out an imaginative series of experiments. The award citation read: For his
wide ranging theoretical and experimental contributions to neutron and X-ray
scattering in materials physics; with particular note of his contribution
to the development of off-specular surface scattering techniques and their
innovative applications to surface transitions in liquid and solid systems,
multiple interfaces, thin films, and corrosion processes.
extracted from a DOE news release dated 2/5/97
ACA AWARDS
Roald Hoffmann Awarded the Elizabeth Armstrong Wood Prize
Roald Hoffmann, who is both the Frank H.T. Rhodes Professor of Humane Letters
and a Professor of Chemistry at Cornell University, has been named as the
first recipient of the Elizabeth Armstrong Wood Prize. The prize recognizes
significant achievement in promoting a wider understanding of science.
That Roald Hoffmann survived his childhood was, in itself, remarkable. Before
he was four years old, the Nazis forced his family to leave Zloczów,
Poland for a Jewish ghetto and then a concentration camp. Smuggled out,
he and his mother were sheltered by a Ukrainian teacher who hid them in
the attic of a schoolhouse.
After the war, he made his way to the United States, graduating from Stuyvesant
High School and Columbia University where he completed his course work in
three years and graduated summa cum laude. He earned his Ph.D. in 1962 at
Harvard where he then accepted a three-year fellowship. During those years,
he worked with Robert B. Woodward, developing what is widely viewed as the
most significant recent conceptual advance in theoretical chemistry. In
1965 Hoffmann moved to Cornell University.
Hoffmann's continued erudition has earned him membership in the National
Academy of Sciences, The American Academy of Arts and Sciences, and the
American Philosophical Society. He is the only person ever to have received
the American Chemical Society's awards in three different subfields of chemistry:
the A. C. Cope Award in Organic Chemistry, the Award in Inorganic Chemistry,
and the Pimentel Award in Chemical Education. In 1981, he shared the Nobel
Prize in Chemistry with Kenichi Fukui.
What has made Hoffmann's career most remarkable has been his deep, continuing
interest in finding and articulating the connections between science and
the arts. He has served as a great popularizer of science not because he
oversimplified the technical but because he articulated the complexity of
the relationships between chemistry and the rest of human experience. He
is also a poet, and his poetry has appeared in a variety of literary magazines
and in two published collections entitled The Metamict State and Gaps and
Verges. In 1993, the Smithsonian Institution Press published Chemistry Imagined,
a unique collaboration between Hoffmann and artist Vivian Torrence. In 1995,
Columbia University Press published The Same and Not the Same, a book that
focuses on the dualities underlying the field of chemistry. In 1997, W.
H. Freeman will publish Old Wine, New Flasks: Reflections on Science and
Jewish Tradition by Roald Hoffmann and Shira Leibowitz Schmidt. He has also
presented a series of television shows entitled "The World of Chemistry,"
widely aired on public stations.
Perhaps Roald Hoffmann's greatest contribution has been not in the insights
he has achieved in a wide range of fields of chemistry but in his determination
to make accessible to everyone the extraordinary links between his beloved
science and the worlds of art, literature, and religion.
Jon Clardy
ACA PUBLIC SERVICE AWARD TO THE HONORABLE GEORGE E. BROWN, JR. OF CALIFORNIA
The 1997 ACA Public Service Award goes to Representative George E. Brown,
Jr. (D-California) for his very effective service in the cause of science.
A graduate of UCLA in Industrial Physics, Brown has been active in science
and environmental issues during his more than 30 years in the House of Representatives.
He has been a member of the Science Committee since 1965 and is the Ranking
Democratic Member of the Committee.
Rep. Brown has been a strong supporter of government funding for scientific
research and space exploration. He led efforts in the mid-1960s and again
in 1979 to restructure and strengthen the National Science Foundation. He
has also sought to open channels of communication between science and government
policy-makers by participating in the establishment of the Office of Science
and Technology Policy, and the Office of Technology Assessment.
As a concerned and articulate environmentalist, Brown championed the establishment
of the Environmental Protection Agency. He has been concerned with carcinogenic
pesticides in the food supply, hazards of burning fossil fuels, destruction
of the ozone layer and global warming. He calls for a balance between population
growth and the use of resources, sustainable development for all members
of the world community.
"I know that scientists are uncomfortable with the ethical or moral
implications of their work. You tell us that your data is objective, and
you leave the value judgments to us. That leaves us free to apply your data
in any way we see fit. . . . The time is ripe for a new generation of mythmakers
and soothsayers who can help us make the leap beyond narrow self-interest
and understand a new reality: that we are all inextricably linked together
on this planet, and that the welfare of the whole is of the highest importance.
As those with the tools and knowledge to help see the future, scientists
have a special and inescapable obligation. Your duty is to speak, not only
to the policy makers, but to the world." -Rep. G.E.Brown, Jr. (NATO/Duke
workshop on Global Integrated Risk Assessment, 10/95)
Virginia B. Pett
CONTRIBUTORS TO THIS ISSUE
Wade Adams, Jeanette Krause Bauer, Helen Berman, Don Bilderback, Jeff Bolin,
Phil Bourne, Susan Chacko, Jon Clardy, Abe Clearfield, Ray Davis, Zygmunt
Derewenda, George Ferguson, Steve Geib, Jane Griffin, Dick Harlow, David
King, Tom Koetzle, Russ Miller, Virginia Pett, Alan Pinkerton, Ehmke Pohl,
Doug Rees, Catherine Schein, Joseph Schrag, Ron Stenkamp, Ken Trueblood,
Al Tulinsky, Marcia Vair, Bob Von Dreele, Loren Williams, Alex Wlodawer,
Bernie Wuensch, Christine Zardecki. Photos: Bill Duax, Ehmke Pohl, Catherine
Schein.
DATABASES / STRUCTURAL INFORMATICS - SPECIALIST STRUCTURAL BIOLOGY DATABASES
One aspect of "Structural Informatics", the subject of this year's
Transactions Symposium, is the development of specialist databases called
"value-added" or "boutique" databases. These databases
combine the information stored in primary archives, such as the Protein
Data Bank and the Cambridge Structural Database, with other biological and
structural data about the molecules of interest.
The Protein Kinase Resource (PKR; http://www.sdsc.edu/kinases/) is one example
of this type of highly specialized resource. The PKR, which is a joint project
of the San Diego Supercomputer Center and the Chemistry Dept. of the University
of California, San Diego, covers in great detail a single protein family
important in signal transduction. Domain experts have formed manual multiple
sequence alignments (currently 600 of approximately 1800 known sequences)
and family classification based on sequence, structure annotation (currently
32 known structures, excluding model structures), comparison, and conformational
analysis. The site also contains general information on investigators, upcoming
meetings of interest, and important literature references taken from the
OMIM database.
The PKR represents a model for developing a powerful and automatically maintained
database and query engine that can be used with a variety of protein families.
This on-going work is based on dictionaries for enzymology, sequence features
tables, and overall family classification, and is developed in STAR/CIF
which complements the existing mmCIF dictionary.
A database dedicated to providing structural information about a single
enzyme HIV protease (HIV PR; http://www-fbsc.ncifcrf.gov/HIVdb/)
has been created at the National Cancer Institute and contains structural
data for three PR variants, namely HIV-1, HIV-2, and simian immunodeficiency
virus PRs.
The HIV PR database will be the source of all available structures in a
unified and fully annotated format. This part of the database, called "Informal,"
contains information about both the protein and inhibitor present in the
complexes of HIV PR, as well as the original sets of coordinates. The information
about complexes, PRs, and inhibitors is available separately. Descriptions
of the complexes, database-unique labels, PDB names, descriptions of the
inhibitors, and references are in the main table which is the gateway between
the more detailed information about the PRs, such as the names of viral
isolates, and the data on inhibitors. The latter includes chemical formulas,
two-dimensional and three-dimensional models, more-detailed description
of the compounds, and conditions of the Ki measurements, if available.
The second part of the database, "Analytical," is organized either
by services giving access to various tools or by results of specific analyses,
which can be viewed immediately. When completed, this part of the database
will provide tools for the analysis of the structures which will make it
more than just the assembly of the coordinate sets.
One of the first specialist structural databases created is the Nucleic
Acid Database (NDB; http://ndbserver.rutgers.edu/). The NDB, which is housed
in the Department of Chemistry at Rutgers University, was established to
serve as a resource for the nucleic acid community. Data are organized in
a searchable relational database that contains not only primary information
about the crystallographic experiment that produced the structure, but also
derived information about various geometric features. Other features of
the NDB include an illustrated atlas of nucleic acid structures complete
with crystal packing pictures, bibliographic references arranged according
to structural type, and standard dictionaries for nucleic acid components.
The NDB has become a test bed for new database and information technology
including the use of mmCIF as its exchange format. More recently, the NDB
Project has transferred its technologies for archiving and querying nucleic
acid structures to create a more general tool called Protein Finder, that
can search for all macromolecular structures. Protein Finder enables the
user to search for structures contained in the PDB and to interactively
create reports based on the PDB file.
These are but a view examples of the value-added databases that continue
to emerge as scientists combine their interests in particular research areas
with new computer technologies.
Helen Berman, Phil Bourne and Alex Wlodawer
NEWSLETTER COVER
Credit for the cover goes to Christine A. Zardecki. She is a member of the
NDB team at Rutgers University . She assembled the database logos and designed
and executed the cover.
The crystallographic community has always been a leader in structural informatics
and the databases represented on the cover to do not completely cover what
is availabe. The following databases are represented by their logos:
Protein Kinase Resource
http://www.sdsc.edu/kinases/
mmCIF - Macromolecular Crystallographic Information File
http://ndbserver.rutgers.edu/NDB/mmcif/
Protein Finder
http://ndbserver.rutgers.edu/NDB/pfnd-v4/
Molecules R US
http://molbio.info.nih.gov/cgi-bin/pdb/
HIV Protease Database
http://www-fbsc.ncifcrf.gov/HIVdb/
PDB - Protein Data Bank
http://www.pdb.bnl.gov/
BMCD - Biological Macromolecule Crystallization Database
http://ibm4.carb.nist.gov:4400/
CCDC - Cambridge Crystallographic Data Centre
http://www.ccdc.cam.ac.uk/
NDB - Nucleic Acid Database
http://ndbserver.rutgers.edu/
NCBI - National Center for Biotechnology Information
http://www.ncbi.nlm.nih.gov/
MOOSE - Macromolecular Structure Query
http://db2.sdsc.edu/moose/
CATH - Protein Structure Classification
http://www.biochem.ucl.ac.uk/bsm/cath/
NRL_3D - Sequence - Structure Database
http://www.gdb.org/Dan/proteins/nrl3d.html
BioMagResBank
http://bimas.dcrt.nih.gov/sql/BMRBgate.html
Picornavirus
http://www.iah.bbsrc.ac.uk/virus/picornaviridae/index.html
REQUEST FOR NOMINATIONS FOR THE ELIZABETH A. WOOD SCIENCE WRITING AWARD
The ACA Council has voted to name the ACA Science Writing Award the Elizabeth
Armstrong Wood Science Writing Award. Dr. Wood is planning to attend the
St. Louis meeting to present the award to the first recipient, Prof. Roald
Hoffmann of Cornell University.
Dr. Wood was born in New York City in 1912 and received her early schooling
at the Horace Mann School of Columbia University. She received her BA from
Barnard in 1933, her MA and Ph.D. from Bryn Mawr in 1934 and 1939,respectively,
in the area of geology. She joined Bell Research Laboratories in 1943 and
remained there until her retirement in 1967. She received honorary D.Sc.
degrees from Wheaton College (Mass.), Western College (Ohio), and Worcester
Polytechnic Institute. She was President of the ACA in 1957.
The award is being named in her honor for the breadth and clarity of her
writing that, in addition to papers in technical journals,includes: Crystals
and Light, an Introduction to Optical Crystallography (Van Nostrand, 1964,
Dover, 1977); Experiments with Crystals and Light, kit and accompanying
booklet (1964 - translated into 6 languages); Crystal Orientation Manual
(1963) andScience for the Airplane Passenger (1969 - Japanese Edition, 1972,
reissued as Science from Your Airplane Window , 1975).
Nominations of persons who have written books or articles that bring science,
especially crystallography or the results of crystallographic studies, to
the attention of a wider audience are sought. Successful nominees need not
be crystallographers or scientists, and 'writing' could include artistic
efforts, museum displays, etc.
Nominations should include the titles of books, copies of articles, or other
documentation and should be submitted to the ACA office by October 1. Selection
of the winner will be made by ACA Council.
CONTRIBUTORS / EXHIBITORS ACA ST. LOUIS - 1997
We are grateful to the following organizations and institutions whose generous
contributions are helping to make the ACA meeting a success.
Boehringer Ingelheim Research Inc.
Bristol-Myers Squibb Pharmaceutical Research Inst.
Charles Supper Company
DuPont Central Research and Development
DuPont Merck Pharmaceutical Company
Enraf-Nonius Corp.
Hampton Research
Hoffman-La Roche
International Centre for Diffraction Data
International Union of Crystallography
Merck Research Laboratories
Molecular Structure Corp.
Oxford Cryosystems
Pharmacia & Upjohn, Inc.
Procter & Gamble Company
Searle
Zeneca Pharmaceuticals
Be sure to visit with our good friends and exhibitors during the meeting.
Area Detector Systems Corp.
Blake Industries
Hecus M. Braun-Graz
Cyberlab, Inc.
Digital Equipment
Diversified Scientific, Inc.
Enraf-Nonius
Hampton Research
Molecular Simulations
Molecular Structure Corporation
National Center for Biotechnology Information
Osmic Inc.
Oxford Cryosystems
PerSeptive Biosystems
Philips Electronic Instruments
Polycrystal Books
Siemens Analytical X-Ray Systems
Silicon Graphics, Inc.
Charles Supper Co.mpany
X-Ray Research GmbH/ Marresearch XRAY Associates
CANDIDATES FOR 1998 ACA OFFICES - SUMMARY
Candidates for ACA Offices in 1998
The Nominating Committee has selected the following candidates for the 1997
elections for ACA offices in 1998.
Vice-President: Abraham Clearfield and Bernhart Wuensch
Treasurer: Jane Griffin
Committees:
Crystal Data & Computing : Russ Miller and Bob Von Dreele
Publications : Douglas Rees and Loren Williams
Apparatus & Standards: Don Bilderback and Alan Pinkerton
Continuing Education : Jeff Bolin and Ray Davis
To nominate write-in candidates for any of these offices write to the
ACA Secretary: Virginia Pett, NIH/NIAID, Twinbrook II Bldg, Room 108b, 12441
Parklawn Dr., Rockville, MD 20852 FAX: (301) 402-0284. Letters must be received
by September 15, 1997 and must be signed by 5 supporting ACA members and
include a signed statement by the candidate describing his or her qualifications.
Statements from all candidates will be included with the ballots which will
be sent to all members in October 1997.
1997 Nominating Committee, Dick Harlow (Chair), Eddy Arnold and Hugo Steinfink
VICE-PRESIDENT CANDIDATES
Abraham Clearfield
Professor of Chemistry and Director of Materials Science and Engineering
Program, Texas A&M University, College Station, TX 77843-3255
Education: BA in Chemistry (1948) and MA in Physical Chemistry (1951) Temple
University; Ph.D. in Physical Inorganic Chemistry and Crystallography (1954)
Rutgers University.
Professional activities: US National Committee For Crystallography (1992-97),
Secretary-Treasurer of USNCCr (1995-'97); Chair Synchrotron SIG (1996),
Member Small Molecule SIG; General Chairman ACA Meeting in College Station
(1981); ACA Nominating Committee (1992); ACA Awards Committee; Program Director,
NSF Structure Program (1972-73); ACA member since 1953; Member ACS, Material
Res. Society; ACS Southwest Region Award (1995); Chairman, Southwest Catalysis
Society (1994); Chairman, Solid State Subdivision, Inorganic Section, ACS
(1984); Workshop on powder diffraction, Univ. de Santandar, Colombia, S.A.
(1989); US delegate to Int. Atomic Energy Agency for status of inorganic
ion exchangers in nuclear processes (1984); ACS Tour Speaker (1984); Assoc.
Ed. Ion Exchange Solv. Extn; Editorial board of 5 journals.
Research interests: Ab initio structure solutions from powder data, solid
state and materials chemistry, inorganic ion exchange materials, catalysis.
Statement: As a graduate student I spent the better part of three years
to solve two crystal structures. We used Beevers-Lipson strips for structure
factor calculations and Pauling punch cards for electron density calculations.
Today we could do the job in less than a week. I remember well the first
presentation of "Direct Methods" by Herb Hauptman and Jerry Karle
and the controversy it stirred. "Put it down in one place (ACA Monograph
I) so we can tear it apart at our leisure" was the gist of the arguments.
My mentor, Phil Vaughan, one of Pauling's proteges, leaned over and whispered
"those guys really are on to something." I'll say! How prophetic
those words were. Each decade since then has seen rapid advances in the
broad fields of crystallography, structural science and diffraction physics.
The advent of high speed computers at modest cost, highly sophisticated
software, pulsed neutron sources, high brilliance synchrotrons, image plates
and CCD's among other advances have revolutionized our science. Remarkable
results have been achieved in the solution of crystal structures from powder
data. Widespread application of these powder techniques will be of tremendous
benefit to solid state and materials research. The lesson is clear. There
are endless frontiers to conquer and our science must remain at the forefront
of those frontiers. We can assure this by greater rigor in the training
of crystallographers and diffraction scientists. This is particularly lacking
in chemistry departments. There is also a need to include more solid state
and structural science in undergraduate and graduate programs. As part of
our effort in this direction I am organizing a workshop and symposium on
"Advances in Structure Determinations" to be held at the Spring
American Chemical Society National Meeting in Dallas. The program is sponsored
by the Inorganic Division and will mainly be directed towards inorganic
chemists. It is especially important that the ACA nurture the new generation
of young scientists. Every ffort should be made to provide workshops on
special topics, travel funds to attend meetings, and networking opportunities
and mentoring by more experienced members. It is most important that we
allow them to express their needs to the ACA and that we act on those needs.
A major goal of any scientific society is to provide for the professional
advancement of its members. As the ACA grows in membership and becomes more
diverse we must not lose sight of this goal. We will need to expand the
range of our symposia, workshops and special skills training to meet these
needs. The ACA has been blessed with very dedicated and farsighted leadership.
I would certainly hope to follow in that tradition.
Bernhardt J. Wuensch
Professor of Ceramics, Dept. of Materials Science and Engineering, Massachusetts
Institute of Technology, Cambridge, MA 02139
Education: S.B. 1955, S.M. 1957 (Physics), Ph.D. 1963 (Crystallography)
MIT
Professional Activities: Member, U.S. National Committee for Crystallography
(1980-82, 1989-94); U.S. Delegate, XVI IUCr General Assembly, Beijing (1993).
ACA: Program Chairman, Summer Meeting, Boston (1979); Chairman, Warren Award
Committee (1981-82); Buerger Award Committee (1984-85); Nominating Committee
(1988-89). Mineralogical Society of America: Representative to the ACA (1981
to present). Program Committee, International Conference on Modulated Structures,
Kaulua Kona, HI (1979). Co-organizer and Proceedings Co-editor, Neutron
Scattering in Materials Science, Materials Research Society (1994-95). Basic
Science Editorial Subchairman, J. American Ceramic Society (1970-78). Advisory
Editor, Physics and Chemistry of Minerals (1976-85). Associate Editor, Canadian
Mineralogist (1979-80); Editorial Board, Zeit. Krist. (1981-88). Fellow:
Mineralogical Society of America, American Ceramic Society. Member: ACA,
Mineralogical Association of Canada, Materials Research Society.
Research Interests: X-ray and neutron scattering. Inorganic crystal chemistry,
sulfides, oxides, and fast-ion conductors. Anharmonic thermal motion. Point
defects and mass transport in ionic materials.
Statement: The ACA is presently a robust and vigorous organization. This,
I think, is in large measure due to the success of the Special Interest
Groups. They have provided effective forums for activities extending across
a broad spectrum of the research that constitutes modern crystallography.
As a diffractionist working at the juncture of several disciplines, however,
I am mindful of the fact that the C that constitutes the middle name of
our organization's acronym should always stand for Crystallography in its
broadest context; that, in addition to the SIG programs, our annual meeting
should continue to support and strengthen Transactions symposia, plenary
lectures, and short courses so that we can continue to learn from one another.
In similar fashion, I believe that we must continue to vigorously work to
strengthen communication and explore new modes of interaction with other
societies and groups with interests or techniques that are relevant to the
crystalline state. Other issues that raise the level of my adrenalin are
criteria for publishing crystallographic data and, especially, the teaching
of crystallography (something that I have enjoyed for all of my professional
life)that our field be communicated broadly, thoroughly, and with
authority, for this is an important way in which we ensure the strength
and skills of the next generation of crystallographers.
TREASURER CANDIDATE
Jane Griffin
Associate Research Director, Medical Foundation of Buffalo, Buffalo, NY
14203
Education: BA in Chemistry (1954) D'Youville College, Ph.D. in Chemistry
(1974), SUNY at Buffalo
Professional Activities: Member US National Committee for Crystallography
(1993-1997), ACA, ACS, AAAS, American Peptide Society, Royal Society of
Chemistry, British Biophysical Society, Pittsburgh Diffraction Society,
AWIS, Editorial Board of J. Medicinal Chemistry. Chair, Direct Methods Meetings
(Buffalo, 1976, 1983), Chair, Pittsburgh Diffraction Conference (Buffalo,
1977), Chair, Satellite Meeting of IUCr XII (Buffalo, 1981) Board of Directors,
Western New York Technology Development Center (1987- ). Board of Trustees;
D'Youville Coll. (1989- ), Nardin Academy (1994- ). Treasurer; Windmill
Point Association (1991- ), Women's TAP Fund (1992- ), The Women's Group
(1990- ). ACA Activities; Program Chair - New Orleans ACA Meeting (1990),
Transactions Chair - McMaster Meeting (1986), Nominating Committee (1979
-1981). ACA Service Award (1991). ACA Treasurer (1994-1997)
Research interests: Structure-activity relationships of steroids, cardenolides,
opiates; conformational analysis; CSD database usage.
Statement: It does not seem possible that my first term in office is coming
to an end. When I agreed to run almost three years ago I was aware that
although the term of the Treasurer was three years, a few Treasurers had
served for six years, notably Caughlan, Sparks and Rao. Their generous service
to the ACA in that capacity brought continuity not only to that office but
also to the Councils on which they served. Dr. Rao continues to provide
yeoman service to the ACA as Financial Advisor, member of the Finance Committee
and member of the Meeting Site Selection Committee. Because of this shared
responsibility, the position of Treasurer is not as burdensome as it was
previously. I feel it is an honor to stand for election again
PUBLICATIONS COMMITTEE CANDIDATES
Douglas Rees
Professor, Division of Chemistry and Chemical Engineering, 147-75CH, California
Institute of Technology, Pasadena, CA 91125
Education: B.S., Molecular Biophysics and Biochemistry, Yale College, 1974;
Ph.D., Biophysics, Harvard University, 1980; Postdoctoral Fellow, Harvard
University, 1980-81; University of Minnesota, 1981-82.
Professional Activities: Editorial Boards Science, Protein Science, J. Biological
Inorganic Chemistry, J. Molecular Biology. Review Panel, Stanford Synchrotron
Radiation Laboratory.
Research Interests: Macromolecular crystallography, especially metallo-proteins
and membrane proteins.
Statement: Publications link the present with the future and the past. Not
only should publications report current developments, but they must also
provide educational and scientific resources for future crystallographers
while serving to record past accomplishments. The rapid developments in
electronic publishing provide both challenges and opportunities, especially
in the areas of crystallographic education and data base management. I would
like to work with the ACA to develop these opportunities, while continuing
the high quality of our monographs and journals.
Loren Williams
Associate Professor, School of Chemistry and Biochemistry, Georgia Institute
of Technology
Education: I graduated from historic Fort Richmond Collegiate in Winnipeg,
Canada, which was washed away by the great flood of 1997. I obtained a B.Sc.
in Chemistry from the University of Washington in near record time of seven
years, and a Ph.D. in Physical Chemistry from Duke University. Post doctoral
appointments were at Duke, Harvard and MIT.
Professional Activities: Local Chair, ACA meeting in Atlanta, 1994
Research Interests: DNA damage and serine proteases, intercalation,hydration.
Statement: I encourage everyone to vote for the opposition. If elected I
will seek to increase the number of photographs of ACA officers in the ACA
newsletter.
CONTINUING EDUCATION COMMITTEE CANDIDATES
Jeff Bolin
Associate Professor, Dept. of Biological Sciences, Purdue University, West
Lafayette, Indiana 47907
Education: BS in Biology (1974) Purdue University, MS (1976) and Ph.D. (1982)
in Chemistry, University of California at San Diego
Professional Activities: Member of Editorial Board of Journal of Biological
Inorganic Chemistry (1995-1997); Member of external advisory committee for
the circular polarization beamline resource, ALS, Lawrence Berkeley Laboratory
(1993-present); Ad Hoc member of several NIH study sections (1994-1996);
Member of: ACS, ACA, Protein Society, Society of Biological Inorganic Chemistry,
AAAS, Society of Biological Inorganic Chemistry; Phi Beta Kappa; Big Ten
Conference Medal of Honor.
Research Interests: Structure and function of proteins, especially metalloenzymes.
Macromolecular crystallography currently centered on non-heme Fe dependent
dioxygenases, enzymes with novel metal-sulfur centers, and enzymes involved
in processes related to the biosynthesis of such clusters.
Statement: To me, as an experimental scientist, the phrase "continuing
education" addresses the efforts we make as individuals to acquire
a working knowledge of new methods or procedures pertinent to our research.
If I am elected to the Standing Committee for Continuing Education I will
be very pleased to work with the leaders of the special interest groups
to insure that the workshops associated with our national meetings continue
to serve this function over the broad spectrum of our organization.
As a teacher, I believe that "continuing education" should also
encompass the means by which we educate others in the fundamentals of our
science. Moreover, as a macromolecular crystallographer, I am very much
aware that crystallographic research is increasingly accessible to those
whose formal education is generally more biological and less physical. And
at the same time, the spectacular results achieved by our community emphasize
the value of structural studies in biological research. For these reasons,
graduate curricula in biochemistry as well as molecular and cellular biology
should include units on crystallography. For this reason, I think the Committee
should sponsor a workshop in the near future to address the teaching of
crystallography in different contexts within graduate and undergraduate
life science curricula.
Ray Davis
Distinguished Teaching Professor Department of Chemistry and Biochemistry,
University of Texas at Austin, Austin, TX 78712
Education: B. S. with Honors in Chemistry (1960), University of Kansas Ph.
D. in Physical Chemistry (1965), Yale University
Professional Activities: ACA member since early 1960's; Editorial Board,
Structural Chemistry, 1989-1991; reviewer for Acta Cryst, JACS, Inorganic
Chemistry, Organometallics, Journal of Organometallic Chemistry, and other
journals; author of general chemistry textbooks and ancillaries, presently
in 5th editions
Research Interests: Continuing education we are all in that game!
The ACA has established high standards for workshops and tutorials, those
held in conjunction with ACA meetings and the ACA summer courses, as well
as publicizing and supporting other workshops and schools outside ACA. With
the burgeoning numbers of highly specialized techniques, both computational
and experimental, available not just to crystallographers but also to scientists
using crystallography and its results, this kind of face-to-face interaction
must be continued in the high-quality ACA tradition. I am sure we will have
no shortage of topics on which workshops can be developed.
I believe that ACA should now become more active in the electronic dissemination
of continuing education in crystallography. The first and easiest such move
is to take on an expanded clearinghouse role in alerting the community to
already-existing sites. Each month (week? day?) sees new Web sites on line,
so the first and easiest role that ACA could play in this regard would be
to expand its present Web-page links to "Products/Service Providers",
"Crystallographic Software", and "Other Related Resources".
A similar approach could be taken to connect users to educational sites
that deal with the teaching of fundamental, as opposed to applied, crystallography.
The ACA could also move into the area of developing, or encouraging the
development of, an increasing array of electronically available materials.
Probably each workshop or tutorial now includes some material that is already,
or could be put, in electronic form for Web posting. This electronic availability
would make many aspects of the workshops and tutorials available to a much
broader audience. Might not some of these efforts overlap similar access
available via IUCr or other Internet routes? Of course! But then the approach
of "many paths to the same end" is at the heart of today's electronic
dissemination of information and of continuing education.
CRYSTALLOGRAPHIC DATA AND COMPUTING COMMITTEE CANDIDATES
Russ Miller
Professor, Department of Computer Science, State University of New York
at Buffalo (SUNY) and Senior Research Scientist, Hauptman-Woodward Medical
Research Institute.
Education: B.S. (1980), M.A. (1982), Ph.D. (1985), State University of New
York at Binghamton.
Professional Activities: Member of ACA, ACM, IEEE, and IEEE Computer
Society. Member of the Executive and Advisory Committees for the IEEE Technical
Committee on Parallel Processing (IEEE-TCPP). Co-ordinator for parallel
processing education for IEEE-TCPP.
Research Interests: Computational Direct Methods Crystallography, Parallel
Algorithms and Architectures, Computational Geometry,Image Analysis.
Statement: As a computer scientist who enjoys collaborative research, I
have been fortunate to have worked on several projects (e.g., Shake-and-Bake)
with a very talented group of crystallographers and mathematicians at the
Hauptman-Woodward Institute. While crystallo-graphers continue to push the
forefront of computing, the bulk of their computations are performed on
commodity workstations/PCs. However, with multiprocessor machines becoming
the standard "departmental" computing engine, one might anticipate
that coarse-grained multiprocessor machines, and, in fact, networks of such
machines, will soon become a standard computational tool. I would attempt
to bring some of my experience in parallel algorithms, supercomputing, software
practices, computational science, and web-based computing to the crystallographic
community through the efforts of this committee. (http://www.cs.buffalo.edu/pub/WWW/
faculty /miller/)
Robert B. Von Dreele
Staff Member, Manuel Lujan Jr. Neutron Scattering Center, Los Alamos National
Laboratory, Los Alamos, NM. Instrument scientist for the High Intensity
Powder Diffractometer at MLNSC; developer of the general Structure Analysis
System (GSAS).
Education: BS in Chemical Engineering and Ph.D. in Chemistry at Cornell
University..
Professinal Activities: Member of the IUCr Commission for Powder Diffraction,
Chair-elect of the Neutron SIG, member of ACA, AGU and MSA. co-local chair
for the ACA meeting in Albuquerque in 1993.
Research Interests: Powder diffraction data analysis with particular emphasis
on Rietveld refinement. In a sense this is my "hobby", namely
development of models to describe all the features associated with crystalline
materials and how they are manifested in powder diffraction patterns. This
includes crystal structure, defects such as micro- and macro- strain effects,
texture, diffuse scattering, stacking faults, etc. I am also interested
in in situ neutron powder diffraction especially at simultaneous high pressure
and high temperature.
Statement: The development of modern computer technology is largely driven
by the marketplace interest in user friendly graphical interfaces particularly
for desktop workstations and personal computers. The history of computing
has been very closely tied to the development of the tools of crystallography
for both structure solution and refinement as well as analysis and visualization
of the result. However, many of the computer programs readily available
to us are no more than adoptions of old mainframe programs written many
years ago and they still retain their command driven style of input. I believe
that the ACA should strongly encourage the continued development of crystallographic
software that makes effective use of the modern graphical interface technology.
APPARATUS AND STANDARDS COMMITTEE CANDIDATES
Donald Bilderback
Associate Director of the Cornell High Energy Synchroton Source, 281 Wilson
Laboratory, Cornell University, Ithaca, New York 14853
Education: BS (1969) in physics at Seattle Pacific University; Ph.D. (1975)
in solid state physics at Purdue University
Professional Activities: Member: APS, ACA, American Scientific Affiliation,
AAAS. Correspondent for Synchrotron Radiation News for CHESS, Technical
review committee for Howard Hughs Medical Inst. and for Structural Biology
Center for the Advanced Photon Source, Editorial board of Journal of Synchrotron
Radiation.
Research Interests: Generating and using submicron hard X-ray beams for
microbeam research; better cooling of crystal monochromators under high
heat load; micro-Laue diffraction from small crystals; area detectors for
X-ray research; and standing wave physics on artificial multilayers and
mirror surfaces.
Statement: I am interested to help the apparatus and standards committee
with its ongoing work of facilitating interactions between apparatus designers
and crystallographic users. Often advances are made in techniques, methods,
and equipment design when interested parties have a forum such as the ACA
where these concerns can be heard. I have 20 years of experience working
at synchrotron radiation sources in the development of x-ray optics, detectors,
and crystallographic apparatus that may be relevant for this position and
would be willing to serve if elected.
Alan Pinkerton
Professor of Chemistry, University of Toledo. Joint appointment in the Department
of Physics and Astronomy. Joint appointment in the Department of Medicinal
and Biological Chemistry.
Education: Graduate of the Royal Institute of Chemistry, 1966; Ph.D., Inorganic
Chemistry, University of Alberta, 1971.
Professional Activities: Member ACA, ACS, RCS; Local Chair, ACA Meeting,
1991; Chair, Small Molecule SIG, 1994-5; ACA Development Comm., 1989-92;
AIP Development Committee, 1995-6.
Research Interests: Small molecule crystallography, experimental charge
densities and electrostatic potentials, new crystallographic techniques.
Statement: This is an exciting time to be a crystallographer. The past few
years have seen enormous strides in the development of the technology that
we use to carry out our work. We can divide these into three general areas
- radiation sources, radiation detectors and data analysis. We have witnessed
the new generation of synchrotron sources, as well as refurbished or new
neutron sources, either coming on line or planned to be so in the near future.
In-lab radiation sources have been improved by the introduction of X-ray
mirror technology and the future promises the addition of capillary optics.
Detector technology has seen the introduction of bigger and better image
plates and, more recently, the use of CCD chips. Indeed, CCD devices are
rapidly taking over, not only the areas served by scintillation counters,
but also the domain dominated by image plates, as phosphors optimized for
longer wavelengths and bigger CCD chips, or arrays of chips, come to market.
Data analysis for more difficult (read interesting) problems becomes more
tractable with the introduction of new and more powerful workstations seemingly
on a weekly basis. In parallel to the addition of new hardware, new software
is still being produced by the crystallographic community at an astounding
rate.
The Apparatus and Standards Committee can serve the community by keeping
the membership abreast of these developments. The major tools for this should
be the organization of symposia and workshops, both at the annual meetings
of the ACA and at sites where the possibility for hands-on short courses
exist. For example, the Ohio Crystallography Consortium, which is based
at the University of Toledo, would be willing to host a workshop on non-routine
experiments using CCD diffractometers, locally developed accessories and
expertise drawn from the consortium and from the community at large.
My own crystallographic experience is predominantly experimental, spanning
a quarter of a century, two continents and a broad spectrum of hardware
and software. There has never been a better time to be a crystallographer
whether it be in solid state physics or molecular biology, using in-house
equipment or national facilities. Indeed, as we witness crystallization
experiments in space, the sky is no longer the limit. I look forward to
working with the ACA in keeping our members abreast of the developments
in the field and in spreading the excitement that I feel for our discipline
as we approach the end of the twentieth century
WALTER C. HAMILTON MEMORIAL SCHOLARSHIPS
Applications are invited for Walter C. Hamilton Scholarships in crystallography
for the academic year 1997-98. The Walter C. Hamilton Memorial Fund was
established in 1973 under the auspices of Associated Universities, Inc.
The Fund is used to provide travel and living expenses for students who
wish to come to Brookhaven National Laboratory for limited periods of time
(usually no more than about two months) to pursue their research problems
using the facilities at the High Flux Beam Reactor or the National Synchrotron
Light Source. The Laboratory's facilities are fully available to the students
during their stay. To apply for one of the scholarships, the student must
submit a research proposal of five pages or less, a summary of his or her
educational background (which should include some acquaintance with diffraction
techniques), and three letters of reference. These materials should be sent
to the Chair, Chemistry Department, Brookhaven National Laboratory, P.O.
Box 5000, Upton, NY 11973-5000, and will be reviewed by the W. C. Hamilton
Scholarship Committee. Applications for the 1997-98 academic year must be
received by August 15, 1997.
Thomas Koetzle
55TH PITTSBURGH DIFFRACTION CONFERENCE
The 1997 Pittsburgh Diffraction Conference will be held 6-8 November, 1997,
at the Georgia Center for Continuing Education, University of Georgia, in
Athens, GA. Planning is still under way. The conference will consist of
two or three symposia as follows: 1. Metalloenzymes, Chair: To be announced;
2. Structured Water, Chair: Loren Williams (GA Tech) 3. Possible third symposium
topic to be announced.
This year the Banquet will be held on Friday evening, Nov. 7. The meeting
registration fee is $55.00 which includes $5.00 for PDS membership. Tickets
for the banquet will be sold separately.
A general poster session will be held in conjunction with the conference.
Graduate students are especially encouraged to present their work. A $200
prize in memory of Dr. C.S. Yoo will be awarded to the best poster presentation
by a student. Abstracts for the poster session should be sent to S. Geib,
Department of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260.
Abstracts must be sent by October 1, 1997.
Nominations are requested for the Sidhu award to be presented during the
conference. Nominees should have received their Ph.D after April 1, 1992
and should have a proven record of innovative work in crystallogaphy. Nominations
should include at least 2 letters of recommendation along with the nominee's
CV, list of publications and reprints of 2 or 3 recent publications. Send
nominations to S. Geib before September 15, 1997.
For further information please contact S. Geib (e-mail: geib@pitt.edu. Phone:
(412)269-0833). Updated Conference information can be obtained at the PDC
'97 Web page at http://www.uga.edu/~biocryst/pdc97.html
Steve Geib
PITTSBURGH DIFFRACTION SOCIETY ELECTION RESULTS
Steven Geib - President-Elect (1997)
Ryonosuke Shiono - Secretary (1997-1998)
Jaime Abola - Treasurer (1997-1998)
Robert F. Stewart - Member-at-large (1997-1998)
S. Swaminathan will serve as PDS President in 1997 and Lavinia M. Wingert will serve as Past-President to complete the Board of Directors.
POLYCRYSTAL BOOK SERVICE
Check out our Website - The "rare" crystallography book auction
is finally in full swing! Have you ever wanted to own a first edition Bragg
or Friedel?? How about The Precession Method? Or a Vol. I of International
Tables?? We'll bring the books to the ACA Meeting in St Louis for delivery
to the highest bidders, or ship them if preferred.
NEW BOOKS OF INTEREST TO CRYSTALLOGRAPHERS:
X-ray Charge Densities and Chemical Bonding, by Philip Coppens (Oxford,
358 pages, $85.00 hardbound, 1997) has finally been published! This is Volume
4 of the IUCr Texts on Crystallography, and is the first text "to provide
the background necessary for interpretation of the results of accurate crystallographic
methods, and to present the concepts to a wider community of nonspecialized
scientists." Check our website for a more complete table of contents.
Macromolecular Crystallography, edited by C.W. Carter, Jr. and R.M. Sweet
(AP,700 pages, $99.00, 1997) is Methods in Enzymology Volume 276, Part A.
Its companion Volume 277 Part B is not due out until early 1998. This volume
contains papers on crystal growth, phase determination, instrumentation
and data collection, model building, and refinement. According to the authors,
these volumes are companions to, not replacements for Methods in Enzymology
Volume 114 and 115, which are still available at $179.00 each.
An Introduction to X-ray Crystallography, Second Edition, by M. M. Woolfson
(Cambridge, 402 pages, $90.00 hardbound, $37.95 paperbound, 1996) is a textbook
for the advanced undergraduate or graduate student beginning serious study
of crystallography, and includes all the major topics of crystallography
and diffraction. 2-D computer codes are included which enable the student
to solve many of the problems included with each chapter.
An Introduction to Hydrogen Bonding, by G.A. Jeffrey (Oxford, 303 pages,
$60.00 hardbound, $27.00 paperbound, 1997) is an easy-to-read, well-illustrated
and referenced supplement to the brief descriptions of hydrogen bonding
found in most textbooks. Its coverage of systems from the weak to the very
strong will be useful to those interested in supramolecular chemistry, biological
structure and recognition, water and ice, inclusion compounds, and liquid
crystals, among others.
The Basics of Crystallography and Diffraction, by C. Hammond (Oxford, 1997,
249 pages, $29.95 paperbound) is IUCr Texts on Crystallography Vol 3, and
has just been published! It presents the author's nicely clear renditions
of crystallography and diffraction, building on his earlier RMS Handbook.
Chapters include: Crystals and Crystal Structures; Two-dimensional Patterns,
Lattices and Symmetries; Bravais Lattices and Crystal Systems; Crystal Symmetry,
Point Groups and Crystal Structures: the External Symmetry of Crystals;
Describing Lattice Planes and Directions in Crystals: Miller Indices and
Zone Axis Symbols; The Reciprocal Lattice; The Diffraction of Light; X-ray
Diffraction: the Contributions of Max von Laue, W.H. and W.L. Bragg and
P.P. Ewald; The Diffraction of X-rays and Electrons; and X-ray and Electron
DIffraction of Polycrystalline Materials. Six appendices include model building
and kit suppliers, computer programs, biographical notes on scientists mentioned
in the text, useful crystallographic relationships, vectors and comnplex
numbers, and systematic absences. Answers to problems are included, as are
categorized book references. This should prove to be a very popular introductory
text!
Total-Reflection X-ray Fluorescence Analysis, by R. Klockenkamper (Wiley,
245 pages, $74.95 hardbound, 1997) overviews the field, compares TXRF to
other methods for micro and trace analysis, and describes applications in
geology, biology, materials and environmental sciences, medicine, forensics,
art history and archaeology.
Dana's New Mineralogy: The System of Mineralogy of James Dwight Dana and
Edward Salisbury Dana, 8th Edition, by R. V. Gaines, H.C.W. Skinner, E.E.
Foord, B. Mason, & A. Rosenzweig (Wiley, 1997, 1100 pages, $145.00), offers
descriptions of all the of the more than 3000 recognized mineral species,
emphasizing structure, but also including locations, and has an extensive
cross-index.
Introduction to the Theory of Thermal Neutron Scattering, by G.L. Squires
(Dover, 272 pages, $9.95 paperbound, 1997 reprint of the 1978 Cambridge
edition) is a graduate level text, designed for experimenters who wish to
examine the theoretical bases in a relatively informal style, complete with
problems and solutions.
Crystal Chemistry and Refractivity, by H.W. Jaffee (Dover, 352 pages, $14.95
paper, 1996 corrected reprint of 1988 edition) covers general principles
of crystal chemistry, introduces refractivity, and evaluates crystal structure
and bonding effects on optical properties of crystalline materials, with
many examples from the major mineral groups.
Symmetry Discovered: Concepts and Applications in Nature and Science, by
J. Rosen (Dover, 160 pages, $6.95 paperbound, 1997 enlarged reprint of 1975
Cambridge edition) includes a new preface from the author, solutions to
the problems, and an expanded bibliography.
Crystallography, by D. Schwarzenbach (Wiley, 300 pages, $84.95 hardbound,
1997), is a translation from the original French edition by Alan Pinkerton.
Provides a thorough understanding of the information contained in crystallographic
data files and of the applications of x-ray diffraction methods, describing
the background of theoretical and practical aspects from a geometric viewpoint.
Numerous figures provide a clear representation of important elements of
the subject.
Physical Chemistry: A Molecular Approach, by D.A. McQuarrie and J.D. Simon
(University Science, 1200 pages, $76.00 cloth, 1997) Also available, Solutions
Manual to Physical Chemistry, 1100 pages, $28.50 paper.
Liposomes in Gene Delivery, by D.D. Lasic (CRC, 320 pages, $59.95 cloth,
1997)
All items can be ordered from Polycrystal Book Service, P.O. Box 3439, Dayton,
Ohio 45401, U.S.A., Telephone and FAX 513-223-9070. Prepayment is appreciated,
but not required. We will send books with an invoice, and prefer to be paid
by check to avoid the service charge from credit card companies. However,
charge cards (MC/VISA/AE/DC) are also accepted! Purchase orders are gladly
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inquire. Remember that Polycrystal can order ANY book from ANY publisher
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classroom discounts are available.
Orders and inquiries are possible now by e-mail: polybook@dnaco.net Visit
our Homepage: http://www.dnaco.net/~polybook
WE GRATEFULLY ACKNOWLEDGE THE CONTINUED SUPPORT FROM OUR ACA CORPORATE
MEMBERS
Area Detector Systems Corporation, Poway, California
Biblotek Techische Hochschule, Hanover, Germany
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The Charles Supper Company, Natick, Massachusetts
Crystal Logic, Los Angeles, California
Cyberlab, Brookfield, Connecticut
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Fuji Medical Systems USA, Inc., Stamford, Connecticut
Hampton Research, Laguna Hills, California
Molecular Structure Corporation, The Woodlands, Texas
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Scientific Information Service, Inc, Larchmont, New York
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X-Ray Research GmbH, Hamburg, Germany
MEETING REVIEWS
13th West Coast Protein Crystallography Workshop, Asilomar, Pacific Grove,
California, March 15-18, 1997
Sunny California welcomed the more than 300 participants of the 13th West
Coast Protein Crystallography Workshop organized by Jim Remington and Wim
Hol at the famous Asilomar Conference Center. In addition to a wide range
of talks the meeting included two poster sessions and some leisure time
for nature walks at the nearby beach. This year's workshop maintained the
PI-bar rule continuing its tradition of presentations by young scientists.
The meeting started Saturday night with a session on protein-protein interactions
and protein folding. The first structure presented by Nicholas Sauter was
the a-lytic protease Pro region that acts as a folding catalyst. Theresa
Gamble showed the complex of cyclophilin with the HIV-1 capsid protein.
Celia Harrison then presented the heterotrimeric complex of the GrpE and
DnaK, and Shankari Mylvaganam reported on her high resolution structures
of anti-cytochrome c antibody and its antigen. A highlight of this session
was the very entertaining keynote lecture by Roger Tsien. He showed how
the crystal structure of green fluorescent protein was utilized for protein
engineering.
The Sunday morning session concentrated on receptors and drug design. Richard
Wagner showed detailed ligand binding by the thyroid hormone receptor, and
Oded Livnah presented the extracellular domain of the EPO receptor complexed
with various peptides. The next two talks dealt with T-cell receptor complexes.
Chris Garcia described the structure of an T-cell receptor-MHC complex and
David Fremont presented structures of T-cell receptors with different ligands.
After the coffee break, Mike Randal presented his results on the structure
of a high affinity complex between interferon and its receptor. This was
followed by Pamela Focia who discussed her results on the structures of
the potential drug target HGPRTase. Mary Kopka then presented the crystal
structure of the anti-cancer drug di-imidazole lexitropsin bound to DNA,
and the session was completed by Susan Hoog who described her structural
studies on human herpes virus protease inhibitor complexes.
Kerstin Leuther opened the Sunday evening session presenting her electron
microscopy studies on RNA polymerase II-transcription factor complexes which
consist of up to 6000 amino acids. The 1.8 Å crystal structure of
satellite tobacco mosaic virus using space-grown crystals was described
by Steven Larson, and Stefanie Freitag presented crystal structures of wild-type
streptavidin-biotin complexes and of a circularly permuted variant. Leemor
Joshua-Tor's theme was the role of the C-terminus in the proteolytic activity
of the bleomycin hydrolase Gal6. Amy Martin presented kinetic and structural
studies on the mechanism of EcoRV endonuclease.
The Monday morning session was dedicated to new methods. Charles Kissinger
started with describing a new molecular replacement algorithm featuring
an evolutionary search in six dimensions. Susan Heffron described the structure
determination of the E. coli EF-Tu:EF-Ts complex by a combination of molecular
replacement and multiple isomorphous replacement. The use of Xenon derivatives
in the structure solution of hemolin was described by Xiao-Dong Su, and
Ed Berry showed the use of molecular averaging over a variety of crystal
forms even with protein from different species for bc1 complex crystals.
After the coffee break, Thomas Earnest updated the audience about the latest
developments regarding two-dimensional pixel array detectors. David Edwards
showed how automated map fitting can reduce the amount of time required
to interpret a weak electron density map. Jennifer Kelly introduced a novel
representation of anisotropic motion in protein crystals that enabled her
to model highly flexible loops in neurotropin-3. The presentation by Paul
Adams describing the combination of maximum-likelihood and simulated annealing
started a lively discussion about general concepts in crystal structure
refinement.
There were seven presentations in the following enzyme-mechanism session
starting with Andreas Heine who described the mechanism of catalytic antibodies
using structures with and without antigen. Ken Goodwill and Christelle Sabatier
then shared a double presentation on tyrosine hydroxylase describing the
crystal structure and the various inherited diseases associated with mutations
of this protein. Next Sarah Gillmor showed the structure of a mammalian
15-lipoxygenase and Catherine Drennan described a complex between vitamin
B12 and methionine synthase. Bertram Canagarajah presented the MAP kinase
ERK2. The final presentation by Joanne Yeh featured the enterococcol NADH
peroxidase and glycerol kinase structures.
The final session of the meeting was dedicated to new crystal structures.
Lan Huang led off by describing the structure of the Ras binding domain
of RalGDS. Otis Littlefield presented structures of the DNA binding domain
of a heat shock transcription factor complexed with DNA. The first structure
of a mitochondrial single stranded DNA binding protein was described by
Cheng Yang. John Peters presented a novel protein fold in a leucine-rich
repeat with a-helices on one side and 310 helices on the other. Andrew Huber
discussed the armadillo repeat region of b- catenin. This 540 residue structure
was solved using MAD data from 16 selenomethionines. Lesa Beamer presented
the human bactericidal/permeability-increasing protein that consists almost
entirely of b-sheets. Rhett Kovall presented the crystal structure of a
new lambda exonuclease. The final talk of the meeting was given by John
Tesmer describing his results on the structure of RGS4 complexed with Gi1,
where AlF4- was used to mimick the transition state of the phosphoryl transfer
reaction.
Ehmke Pohl
STRUCTURAL BIOLOGY SYMPOSIUM OF THE SEALY CENTER FOR STRUCTURAL BIOLOGY
GALVESTON, TX, APRIL 11-13 , 1997
Over two hundred scientists, more than half of whom presented posters, attended
the second annual symposium. All the speakers, attendees, and sponsors noted
that the spirit and the hospitality of the meeting were wonderful, a tribute
to the chairman, Werner A. Braun, and the other organizers, particularly
James Lee and Shirley Broz. The symposium began with a presentation of a
crystal whale (sperm whale myoglobin was the first protein to yield to X-ray
crystallographic analysis) to Dr. Thomas James, president of the UTMB Galveston,
for his support of structural biology. In accepting, Dr. James revealed
that the shape was especially appropriate, as he used whale heart for his
studies on heart muscle function.
This remembrance of the origins of structural biology was a pleasant start
to a varied and challenging series of lectures in experimental determination
of macro-molecular structures and recognition, computational methods, and
protein design. In the keynote address, James Wells of Genentech showed
how high resolution X-ray and NMR structures of protein complexes (human
growth hormone (hGH), Staph protein A, atrial natriuretic peptide) allowed
one to select smaller and cheaper molecules for the same function. Phage
display technique yielded hGH mutants that bound to a receptor in which
a tryptophan side chain critical for tight binding of the hormone was mutated.
In the long term, this technique could select "customized hormones"
to activate mutated receptors unable to respond to normal hormones, or binding
inhibitors where the receptor is overstimulated (e.g. acromegaly). High
resolution structures of protein complexes and how to use the information
from them was the theme of several other talks. Johann Deisenhofer of the
UT-Southwestern Medical Center, Dallas received the chemistry Nobel prize
in 1988 with Hartmut Michel and Robert Huber for solving the structure of
the photosynthetic reaction complex. He described the crystal structure
of an even larger membrane complex, mitochondrial ubiquinol: cytochrome
c oxidoreductase. Among the more fascinating aspects was an internal cavity
which he hypothesized could be a storage site for hydroquinone reduction
and recycling, thus keeping the substrate from diffusing away.
Lorena Beese, of Duke University Medical Center, presented a "high
resolution snapshot of a polymerase in action". Extremely accurate
structures allowed her to observe DNA replication by a thermophilic DNA
polymerase within the crystal lattice.
Robert Fletterick, University of California, San Francisco (UCSF), summarized
a class of molecules he calls "the cell's motors", nucleotide
driven proteins that power transport within the cell. The overall similarity
of the proteins is best seen at the tertiary level, e.g., the crystal structure
of kinesin linked it to an apparently dissimilar muscle motor, myosin. The
role of computational chemistry in macromolecular structure determination
and prediction was also emphasized. Irwin Kuntz of UCSF showed examples
where structure based molecular design was used to design drugs and enzyme
inhibitors. He has a revised program, DOCK 4.0 which can be downloaded from
the Internet which "docks" a molecule to another using a simple
graphics matching algorithm, and a new program "BUILDER", where
a small molecule can "grow" within the desired site. Serge Timasheff,
professor emeritus of Brandeis University, discussed the binding of salts
and osmolytes to proteins in mathematical terms. A practical theory for
the interaction of co-solvents specific proteins should aid in obtaining
high concentration protein solutions needed for obtaining crystals and NMR
analysis.
David Eisenberg (UCLA) presented a new interpretation of oligomer formation,
" domain swapping". Several crystal structures show two monomers
(e.g., Diptheria toxin) exchanging a segment when forming a dimer. The requirements
are a large area of the protein with clear hydrophobic and hydrophilic faces
joined to the rest of the molecule by a flexible linker. The mechanism can
account thermodynamically for why aggregates form more easily once a dimer
forms, and why it is difficult to separate aggregates.
George Georgiou, of the UT-Austin, has a bacterial cell surface expression
system for engineering antibodies, which exposes the mutated protein to
solution with unrestrained flexibility. He also has an in vitro automated
selection system, where mutated DNA is transcribed with T7RNA polymerase,
the mRNA is translated in a lysate and selection of proteins based on their
ability to bind hapten is done robotically. Stan Watowich (UTMB Galveston)
presented ongoing crystallographic studies of kinases involved in intracellular
signal transduction. David Gorenstein (UTMB, Galveston) showed the 750 MHz
NMR structure of two conformers of Benzo[a]pyrene Diol Epoxide/DNA adduct
which in one conformation is highly carcinogenic and suggested aspects of
the structure that may account for toxicity. Kathleen Matthew (Rice University,
Houston) has combined site-directed mutagenesis studies with molecular modeling
and analysis of the crystal structure of the lac repressor protein. Mutants
that retained full inducer (IPTG) and receptor binding but adapted a dimer
rather than a tetramer structure were made by altering a few critical amino
acids. Even a high resolution structure cannot explain everything, however.
In an amusingly presented talk, Michael Weiss (University of Chicago) showed
that removing structure from the transcription factor SRY made it bind more
specifically to DNA. Two point mutations in the DNA binding region rendered
the NOESY spectrum of the free protein esssentially peak-less in that area,
while that with DNA was as clear and structured as for the wild type complex.
This "battered protein" (Weiss compared what they were doing to
smashing a piano to improve tone), unlike its parent, did not bind non-specific
DNA, although both proteins complexed irreversibly with their substrate
and were able to bend DNA. Discussion continued at the poster sessions,
which ranged from new computational methods to describe the surface area
of molecules (group of Werner A. Braun) to crystal structures of proteins
at < 1 resoltion from Kurt Krause's group at the University of
Houston. We hope that the spirit will continue in next year's symposium
(see our web site http://www.scsb.utmb.edu for information).
Catherine H. Schein
SYMPOSIUM IN HONOR OF DAVID R. DAVIES' 70TH BIRTHDAY, NIH, APRIL 25,
1997
David was born in Wales and studied at Magdalen College. He obtained his
D.Phil from Oxford University, and was a postdoc in Linus Pauling's laboratory
at Cal.Tech before coming to the NIH in 1955. He has been and is currently
involved in a vast variety of novel structures and structural analysis studies.
Postdocs from his lab have gone on to found four independent crystallographic
groups at the NIH, and many laboratories in academia and industry.
The symposium was opened by Philip Gordon, Director of NIDDK, and the first
session was chaired by Kiyoshi Mizuuchi. Brian Matthews (U. Oregon), a former
postdoc of David's, described the work of his laboratory on T-4 lysozyme
as a model system for examining protein stability and folding. Residues
in highly mobile sidechain regions were generally substitutable by other
amino acids, while those in the more rigid parts of the molecule were very
sensitive to mutation. Insertions into helices caused translocation rather
than local bulges. Studies of interior cavities led to recent experiments
with rare gases diffused into the protein. Definite difference peaks were
observed, with weak peaks indicating either weak binding or fewer electrons.
Multiple methionine substitutions still maintained the three-dimensional
structure and activity. He likened the structure of T-4 lysozyme to a 'tolerant
jigsaw' model.
Alex Rich (MIT), who first invited David to work at the NIH in 1955, spoke
about Z-DNA and MRNA editing. Their collaborative work in the early 60's
was the first to show regular RNA structures with complementary strands.
He discussed Z-forming sequences, which form Z-DNA but are relaxed back
to B-form DNA by topoisomerases in a short time. RNA adenosine deaminase,
which unwinds double-stranded RNA but not DNA or single-strand RNA, has
been extensively studied by his laboratory.
Michael Potter's (NCI) talk followed, entitled 'Pathogenetic mechanisms
in plasmacytoma development'. After describing David as the 'Renaissance
Man of Structural Biology', he gave a fascinating history of the early discovery
and production of monoclonal antibodies. McPc603 was the first myeloma protein
with known binding specificity (to phosphocholine) to be structurally characterized.
This protein has gained new interest with the recent discovery by Martin
Young that the antigen specific for McPc603 is a carbohydrate from Proteus
morganii, a bacterium. Recent work by Matthew Scharff and coworkers showed
that a single-site mutation in S107, another antiphosphocholine autoantibody,
abolishes its phosphocholine specificity but acquires binding to double-stranded
DNA.
The morning session concluded with a talk by Gary Felsenfeld, a longtime
fellow scientist with David at the Lab of Molecular Biology, NIDDK. His
talk, 'Chromatin Structure and Gene Expression' described the simplest chromatin
structure as 'beads on a string' separated by linker DNA. The nucleosome
beads, 165 bp DNA wrapped around histone octamers, are further compacted
into fibers. The transcriptionally active sections are still partially compacted.
Promoter and enhancer regions are relaxed and lose the histones, and supercoiling
is positive ahead of transcription and negative behind. Recent data shows
that the transcribed end reuses the same histone octamer.
After lunch, Bill Eaton of NIDDK took over as session chair. The first talk
of the afternoon, by Edith Miles (NIDDK), described the structural studies
of the tryptophan synthase complex, a collaboration between her lab and
David's. Early studies of this complex produced in E.Coli did not crystallize,
but (10 years later!) protein from Salmonella produced well-diffracting
crystals. The a2-b2 tetramer showed that the active sites in the a and b
subunits are 25 Åapart, but that a hydrophobic tunnel provides a physical
conduit for indole channeling. Recent high resolution studies of mutant
enzyme with and without bound ligands to the a and b subunits have provided
details about the catalytic and allosteric properties of the enzyme.
Marty Gellert, another founder and current member of LMB, NIDDK, discussed
VDJ recombination. The first step is a site-specific cleavage which generates
one hairpinned and one blunt-cut coding end. RAG1 and RAG2 proteins are
required, and interestingly, can transfer VDJ activity to non-lymphoid cells.
The cleavage step involves nicking and hairpin formation, for which a divalent
ion is required. With Mg++, the reaction stops after the nicking, while
with Mn++ it continues to completion.
'Cooperative folding of an apo-myoglobin folding intermediate', was the
title of Robert Baldwin's (Stanford) talk. NMR spectra of partially unfolded
proteins were shown to have features of both fully folded and fully unfolded
states; thus, they were folded in regions. Intriguingly, studies by Schulman
and Kim on a-lactalbumin have shown exactly the opposite result! Baldwin's
group has also looked at mutants involving solvent-exposed residues, and
concluded that destabilizing mutations lead to non-cooperative folding.
Cooperative folding has been shown to depend on stability and the action
of some salts.
Ira Pastan (NCI), another collaborator and tennis partner of David's from
NIH, spoke about the design and testing of recombinant immunotoxins in human
cancer. The toxin used was Pseudomonas exotoxin A, which kills cells by
interfering with the ribosomal machinery. The second and third domains of
this toxin were attached via a lysine to the B3 antibody, whose antigen
is a carbohydrate highly expressed in many cancers. This immunotoxin was
put into clinical trials with significant success, but it was discovered
to have a long half-life and to cause damage to epithelial cells. A refined
version had the variable domains of the antibody as a single chain, and
had a shorter half-life but was susceptible to aggregation. A disulfide-stabilized
Fv made by mutating two residues to Cys was much more stable and is currently
in clinical trials.
Paul Sigler (Yale) described his learning experience as a postdoc in David's
lab, and went on to discuss 'Trimeric G proteins: Structure, mechanism and
regulation'. He described G-protein mediated transmembrane signalling, focusing
on transducin and its signalling action in the retina. The a subunit of
this 3-domain protein has been solved in complex with a GTP analog, GDP
and GDP+AlF4.. The b and g subunits were solved independently, as well as
in complex with GDP and a GTP analog. This family of structures showed that
the GTP-GDP change was accompanied by three loop movements, and identified
a possible membrane-binding surface.
Returning to the origins of protein crystallography, Max Perutz (MRC, Cambridge)
closed the symposium with 'How the structure of proteins was not solved'.
He described the intellectual excitement at Cambridge starting in the 30s,
with photographs of John Bernal, Dorothy Crowfoot (later Hodgkin) and W.L.
Bragg in those days. During the early days of his work on hemoglobin, solving
the structure of a protein was considered a hopeless task by many crystallographers.
He traced the breakthroughs in the diffraction analysis, mostly done by
hand and eye in those days before computers were commonly available. Once
it was determined that a heavy atom crystallized along with the protein
could be detected in the diffraction pattern, the structure was deemed solved.
(Michael Rossman followed this talk with an anecdote: at the time he was
considering working with Perutz, another crystallographer told him 'You
know, what Max does is not really science'!)
The symposium was followed by a banquet at the NIH Cloisters, enlivened
by reminescences from Brian Matthews, Paul Sigler, Alex Wlodawer, Rick Bott,
Sally Davies, Gary Felsenfeld, and Marty Gellert. Summaries and photographs
of the symposium will be at http://www-mslmb.niddk.nih.gov/davies70/
Susan Chacko
THE 27TH MID-ATLANTIC PROTEIN CRYSTALLOGRAPHY MEETING , MAY 8-10 , CHARLOTTESVILLE,
VIRGINIA.
At the start of the meeting we were reminded that it was in Charlottesville
that Bob Kretsinger organized the first MPCM and that in those days all
the participants could easily fit in Bob's living room. Attendees also had
the opportunity to visit the new crystallographic lab in the Health Sciences
Center at UVa, recently established by Wladek Minor, Fraydoon Rastinejad,
Michael Wiener, Ulla Derewenda and Zygmunt Derewenda, all of whom served
on the Organizing Committee with Bob Kretsinger and David Benjamin; Wladek
Minor ably chaired this body.
The Meeting had a record number of 151 registrants, and some speakers, specifically
George Sheldrick, Eleanor Dodson and Jorge Navaza, flew from locations not
typically associated with the US East Coast. The meeting opened on Thursday,
May 8, with a keynote address by Paul Sigler. His talk, a Jessie Beams Memorial
Lecture in Biophysics, was co-hosted by Tom Thompson, chair of the Biochemistry
Department at UVA. Paul talked about the mechanisms of signal transduction
by trimeric G-proteins. The picnic which followed was somewhat affected
by the weather, but the discussions provided extra heat.
Friday was packed with seventeen 20 min presentations, addressing either
structural studies of vital proteins or some aspects of crystallographic
methodologies. The session was co-chaired by Bob Kretsinger and Zygmunt
Derewenda. It is somewhat unfair to highlight any of the presentationsall
were very goodbut it may be informative to mention a few, though arbitrarily
selected. Jim Hurley, NIH, spoke about the structure of the homodimer of
the catalytic subunit of adenylyl cyclase, one of the critical effectors
of trimeric G-proteins. Michael Word, Duke University, presented results
of packing analysis in high resolution protein crystal structures, an analysis
facilitated by a new software package developed at Duke. The approach involves
van der Waals contact analysis only after calculated positions of hydrogen
atoms are included. Several errors in high resolution structures were identified,
many including Asn and Gln residues. Jacek Lubkowski, NCI Frederick, spoke
about complexes of L-asparaginase with inhibitors and presented evidence
implicating Thr12 as a nucleophile, while Osnat Herzberg introduced an interesting
hypothesis of domain rotation that attempts to explain the mechanism by
which remote sites in pyruvate phosphate dikinase communicate.
There were a number of posters on display and the individuals presenting
them had an opportunity during the Friday session to introduce themselves
and describe their posters in a couple of sentences. The challenging day
was crowned by another picnic, this time featuring fine steaks and a splendid
evening.
Saturday was a real treat. If you are close to the East Coast and you missed
it, you have yourself only to blame (at least watch out for next year's
Meeting). Two workshops running in parallel focused on data collection and
refinement. The former workshop included Zbyszek Otwinowski (Southwestern,
Dallas) and David Rodgers (University of Kentucky); the latter included
George Sheldrick (Göttingen, Germany), Eleanor Dodson, (York, UK) and
Jorge Navaza (Paris, France).
During the refinement workshop, chaired by Fraydoon Rastinejad, George Sheldrick
described in detail the new version of his SHELX97 suite (http://linux.uni-ac.gwdg.de/SHELX)
which is particularly aimed at those macromolecular aficionados who regularly
abused earlier versions. The refinement suite now features a selection of
routines that integrate it with other packages, such as the CCP4. The program
includes a classical Fourier summation and is intended specifically for
high resolution structures, i.e. ~1.7Å or better. Its features include
anisotropic treatment of displacement (B) parameters. Two questions are
most commonly asked here: at what resolution should one start to use the
anisotropic model, and how much time does this refinement really take? George
had answers to both. Meaningful anisotropic refinement has been reported
using data to 1.5Å or higher, although typically these data were of
very high quality, i.e. complete and with high I/s(I) ratio even in the
outermost shell. The free R factor is a useful monitor and should decrease
at least by 1%, preferably more, to validate the calculation. You can keep
the same set of free reflections as you go from X-PLOR to REFMAC and SHELX,
so that the latter can be used only in the final stages of work. The results
should be chemically meaningful and one should see typically main chain
carbonyl oxygens vibrate perpendicular to the peptide plane, etc. Finally,
the issue of time. Owing to Wladek's energy George was able to carry out
his bench test (1 cycle, 400 atoms) on a 433MHz Digital ALPHA workstation:
63 seconds. This is twice as fast as on a DELL PC with Pentium Prostandard
in George's laboratoryalthough there will soon be a version for a dual
processor PC. It is also four times faster than on the SGI Indigo 2. One
should note that PC under the Linux operating system constitutes an increasingly
attractive option as a number-cruncher in a crystallographic laboratory.
Eleanor Dodson expanded in her presentation on the use of REFMAC, the maximum
likelihood refinement package that is now a part of the CCP4 suite (you
can ftp the new suite from ftp.ccp4.db.ac.uk). Eleanor started with a show
of 'Fourier ducks' that suffered from various mutilations in the original
transform. Note that these and similar images can be found in Kevin Cowtan's
Picture Book of Fourier at http://www.yorvic.york.ac.uk/~cowtan/fourier/fourier.html).
In this way we were shown how incomplete data affect our electron density
maps, and how this is dependent on exactly what data (a shell, a cone, random,
etc) are missing. These diagramsas Eleanor suggested should really
be on the wall of every X-ray lab, as a permanent reminder of how a good
experiment ought to be conducted. The REFMAC program has numerous advantages.
Because the minimized quantity is different from that in classical least-squares,
the resulting estimates of phase angles coupled with the sA weighting lead
to electron density maps of superior quality. It has also been found that
the resulting agreement between calculated and observed amplitudes is frequently
better. Eleanor also described the problem of anisotropy in the data, often
encountered with flash frozen crystals. REFMAC offers the possibility of
anisotropic scaling which frequently reduces the conventional R factor by
several percent.
Jorge Navaza discussed new ideas that are being implemented in AMORE, the
revolutionary Molecular Replacement suite that solved many problems that
have aged confined to the depths of our drawers while awaiting their luck.
We looked with amazement at the high-tech screen in the auditorium which
let us see the screen of the SGI monitor that Jorge used to demonstrate
his software. As the molecules moved around the screen to fit within a unit
cell without colliding with one another, real-time R factor and correlation
factor calculations monitored the likelihood of the solution. His presentation
precipitated a discussion on validation of MR solutions: the consensus seemed
to be if in doubt, get independent phasing information.
Finally, Xinhua Ji discussed the difficulties in refining flexible fragments
of the structure. One of his comments, reiterated by both George and Eleanor,
was that one should use all data and not truncate or otherwise mutilate
your experimental results. When dealing with weak data, it often pays off
to recollect, using longer exposures, higher flux sources, etc.
Questions and open discussion lasted for over 90 minutes after lunch, demonstrating
the need for such training events and hunger for knowledge among our young
colleagues. It was invigorating to have been a part of this debate and George
Sheldrick said something very similar to Wladek as he boarded his plane
on Sunday morning.
A workshop on "Cryo-crystallography and Data Collection," attended
by 35 people, was chaired by Michael Wiener (UVa). David Rodgers (U. of
Kentucky), who is in his words "the only protein crystallographer in
the state of Kentucky," presented a lecture on cryocrystallography.
David, who has written the "Practical Cryocrystallography" chapter
in the new Methods in Enzymology volume 276 (Macromolecular Crystallography,
Part A), has developed a variety of technical methods as well as set much
of the oral tradition of cryocrystallography into print. Topics included
a brief history of the method, cryosolvent selection and crystal transfer/handling,
and display of a variety of essential widgets for use of the methods. A
lively discussion of the use of liquid N2 versus propane for rapid cooling
took place, with a decidedly partisan group advocating the use of liquid
N2 However, David presented data from T.-Y. Teng (inventor of the loop-mounting
method) on rates of cooling for different methods, indicating that liquid
propane may cool samples somewhat faster than liquid N2 . A handy tip: if
your crystals are drying out rapidly in the loop after mounting, place a
humidifier nearby to increase the relative humidity a bit.
The inimitable Zbyszek Otwinowski (UT Southwestern) followed with a lecture
on data collection and reduction, centering around (surprise!) an exposition
on the use of the DENZO/SCALEPACK software package. The autoindexing continues
to be made increasingly robust. Among other features, the "FIT ALL"
command is actually now a smart command, which will only fit those parameters
appropriate for the indicated detector and resolution of the data. Data
consisting completely of partial reflections can also be handled. Also,
aspects of a very nice GUI (graphical user interface), which promises to
be a wonderful front-end for use of the software, were presented. Some of
the underlying theoretical issues were also presented, chiefly the use and
importance of error models for appropriate statistical validation of data
reduction. There was a spirited diatribe regarding the uses and abuses of
the Rsym statistic to make data appear of nearly arbitrary quality in a
user-dependent fashion, and the advocacy of I/s(I) as a better indicator
of data quality (along with essentially no intensity cutoff for data reduction).
Following the lecture, interested individuals accompanied Z.O. for further
hands-on work.
Many participants expressed their regrets that it was not possible to attend
both workshops. Indeed, with hindsight, we should have probably organized
parallel structural sessions on Friday to allow for workshops to be run
consecutively. Maybe next year the organizers will take this option into
consideration.
The Meeting was made possible by generous support of sixteen sponsors, many
of whom exhibited their products during the meeting. Next year, we will
all assemble again. Watch out for the news!
Zygmunt Derewenda & Michael Wiener
NEWS & NOTICES
San Diego Supercomputer Center to Continue Support of Crystallography
The San Diego Supercomputer Center (SDSC) is to become the leading edge
site in a National Partnership for Advanced Computing Infrastructure (NPACI)
headed by the University of California, San Diego (UCSD). SDSC will receive
funding for at least the next five years from the National Science Foundation
(NSF) as one of the country's two major centers for high performance computing.
The other is the National Center for Supercomputing Applications (NCSA).
Part of the mandate for SDSC is a teraflop/petabyte initiative. In the short
term SDSC will receive the first TERA computer expected to perform at over
1012 floating point operations per second. At the same time massive handling
in the 1015 byte range is being designed and implemented.
SDSC supports a number of initiatives in crystallography (see http://www.sdsc.edu/Xtal/Xtal.html),
including software development and the activities of the ACA and the IUCr.
These initiatives will be expanded in the next five years. Suggestions from
the community as to the type of activities we should support are welcome
and can be sent to bourne@sdsc.edu.
Phil Bourne
CAMBRIDGE CRYSTALLOGRAPHIC DATA CENTRE (CCDC) ANNOUNCES NEW APPOINTMENTS
The Board of Governors of the CCDC has made two key appointments to secure
the future development of Centre in sucession to Dr. Olga Kennard, OBE FRS.
They have appointed Dr. David Hartley as Executive Director. He will be
responsible for the overall management of the Centre, and will contribute
considerable expertise to the development of the informatics infrastructure
of the CCDC. He was director of the University of Cambridge Computing Service
from 1970 - 1994. Since then, he has been Chief Executive of the UK Education
and Research Networking Association which is reponsible for the develpment
of JANET and SuperJANET networks.
The Board has also appointed Dr. Frank Allen as Scientific Director of the
CCDC. Dr. Allen will be responsible for the scientific strategy of the Centre.
He joined the CCDC in 1970 and was appointed Deputy Director in 1992. He
is well known for his contributions to the development of the CSD System
and for his research work in structure correlation and chemical information
science. He has a strong background as an academic crystallographer, being
a member of the IUCr Committee on Crystallographic Databases, Editor of
Section B of Acta Cryst, and Vice-President elect of the British Crystallographic
Association.
The two appointments are designed to enhance CCDC's unique position within
the international scientific community and to strengthen its information
systems development, support and distributions capabilities.
David King
THE PROTEIN STRUCTURE PROJECT
The Protein Structure Project is the topic of a fantastic, very readable
article by Al Tulinsky published in Annual Reports in Medicinal Chemistry
(1996) 31, 357-366. David Harker, when Irving Langmuir asked what he'd do
with a million dollars, stated he'd solve the structure of a protein. In
1950, Langmuir finished raising the funds, and Harker organized a group
to solve the structure of ribonuclease. It's interesting to have a first-hand
account of how various technical problems were solved, things like crystal
growth, making and using isomorphous derivatives, diffractometry, and computing.
Many of the techniques now in use in daily structure determinations, both
macromolecular and small molecule, stem from the Protein Structure Project.
Harker and friends deserve great admiration and credit for their efforts
and creativity. Tulinsky presents the issues and problems faced by the Project
in ways that make them exciting 45 years later. Reprints of the article
are available from Al Tulinsky, Department of Chemistry, Michigan State,
East Lansing, MI 48824-1322
VERNER SCHOMAKER (1914-1997)
Verner Schomaker, possessor of one of the most critical and wide-ranging
scientific intellects of our time, died in Pasadena, California, on March
30, 1997, of pancreatic cancer. What follows is a very personal account.
Many of those who worked with or were closely exposed to Verner might have
written something similar; I am confident that the general flavor would
have been the same.
Every scientific question seemed to interest Verner, and anyone with a knotty
problem was welcome at his always-open door. And his time was always yours
until he, at least, understood in some depth what you were asking,
and preferably you did too. The answer did not, of course, always come in
one session even though the sessions could last for many hours, past
meal times and past other appointments that you forgot about because you
were so engrossed. His memory was prodigious, and when he encountered a
problem he 'worried it', like a dog with a bone. He might not have all the
insight he wanted when the question was first raised, or even during the
next few days or weeks but he wouldn't forget. You might encounter
him some years later, and he'd say: "I've been thinking about what
you said, and ....".
He was at once friendly, open, uncommonly generous, and extremely bright.
He was, to those who were privileged to work with him or otherwise benefit
from his insights, simply without peer as a one-on-one teacher. In the 40's
and '50's, many who worked with him felt complimented when he would say
"How can you be so god-damned stupid?", since we realized that
he expected us to understand and that, frustrated though he might be with
our slowness, he would not give up until we understood, or left. In his
later years, he learned patience and mellowed somewhat, and those who couldn't
follow an abstruse line of reasoning he was explaining might be asked "What
do I have to do, say it louder?" But never, and I do mean never, was
there any animosity involved in what might seem to some to be harsh remarks.
Nor did Verner's own ego ever intrude. He was selfless, far more so than
almost anyone imaginable with his level of intellect and accomplishment.
He was interested in getting things right, not in who got the credit, and
was never afraid to admit his errors and his own limitations, although he
overestimated them (as he, generously, did the abilities of some of his
collaborators).
He is best known for his contributions in electron and X-ray diffraction.
He thought that his most important contribution had been in the early days
of electron diffraction, for development of techniques for the visual interpretation
of the scattering of electrons by gas molecules. None of the structures
reported from his productive group had later to be revised, when sector
methods gave greater resolution and precision. But he published in many
other fields as well one of his final papers (with J. Waser) was
on the "Global Thermodynamics of Systems That Include Stressed Solids",
and he was saddened that he could not interest any colleague in studying
it intently enough to discuss it with him meaningfully. At least one of
his papers became a "Citation Classic" in the Science Citation
Index. However, his total publication list probably didn't reach 200 papers,
because he was a perfectionist when writing a paper, and because he was
so readily distracted by the intriguing problems presented by those who
sought him out. His generous spirit, his penetrating intellect, his breadth
of interests and curiosity, and his selflessness, led almost everyone within
his orbit to use him as a consultant. There is little doubt that if there
were a "Science Advisor Acknow-ledgment Index", he would have
ranked at or very near the top. It has been estimated that during the 1940s
and '50s, at least one third, and perhaps as many as one half, of the papers
published by the "Gates and Crellin Laboratories" (the Caltech
Division of Chemistry) concluded with a phrase such as "We are grateful
to Professor Verner Schomaker for helpful discussions", or "The
valuable insights provided by our colleague Verner Schomaker helped to make
this work possible". And these papers covered the gamut of work in
the Division, not just in diffraction, but in quantum mechanics, immunochemistry,
nmr, spectroscopy, thermodynamics, inorganic and organic chemistry. In those
years, the reference "V. Schomaker, unpublished" was so common
(in others' ppers especially) that it could be recognized by the astute
as what Patterson meant by "Vernished" in his famous spoof of
the Acta Crystallographica telegraphic style.
A native of Nebraska, where he grew up on a farm, he earned a BS from that
state's University in 1934 and an MS in 1935. He then moved to Pasadena,
where Pauling quickly recognized his uncommon qualities. After receiving
a PhD in 1938, he went up the academic ladder in Chemistry at Caltech (taking
time out for war-time research from 1942 to 1945). He received the ACS Award
in Pure Chemistry in 1949, and served as ACA President in 1961-62. In 1958
he left academic work to join the Union Carbide Research Institute (just
north of New York City), where he spent 7 years but when it became
apparent that the initial promise of something modelled on the Bell Labs
or what was then the Shell Development Lab was never going to materialize,
he joined the faculty of the Department of Chemistry at the University of
Washington in Seattle, serving initially for 5 years as Chair, during an
important time for faculty growth. He became Professor Emeritus in 1984.
After his retirement, he was also a Faculty Assoc. at Caltech, dividing
his time about equally between Pasadena and Seattle.
He is survived by his wife Judy, his sisters Helen and Mariana, his sons
David, Eric, and Peter, and eight grandchildren. His family has requested
that donations in his memory be made to the Verner Schomaker Memorial Fund,
c/o California Institute of Technology, Office of Donor Relations, Mail
Code 105-40, Pasadena, CA 91125. The fund will be used to support student
research.
The complete text of this 21-line paper by "A. L. Pon" is reproduced
in Patterson and Pattersons, edited by Jenny Glusker, Betty Patterson, and
Miriam Rossi, Oxford University Press (1987), p. 618
Kenneth Trueblood
CALENDAR OF MEETINGS
To conserve space and paper, contact points for most meetings announced
in previous newsletter issues will not be repeated. More complete information
can be found in back issues of the newsletter.
JULY 1997
20 - 25 ACA '97 St. Louis, MO. Contact: Lee Brammer FAX: (314) 553-5342
E-mail: Lee.Brammer@ umsl.edu.
27 - 1 Sagamore XII. Charge, Spin and Momentum Densities, Waskeslu, Canada.
Contact Bev Robertson, Dept. of Physics, U. of Regina, Saskatchewan, Canada
S4S 0A2. e-mail: robertsb@leroy.cc. uregina.ca.
AUGUST 1997
4 - 8 46th Annual Denver X-ray Conference, Steamboat Springs, CO. In addition
to XRD and XRF Sessions and Workshops, Program will include a symposium
on High Resolution Diffraction and X-Ray Topography. Contact: Carole Collier
phone (303) 871-3515, FAX: (303) 871-4450, e-mail: denxrcon@du. edu, The
program may be found on the University of Denver - Engineering Department
home page: http://www.engr.du.edu
31 - 4 XVII Conference on Applied Crystallography, Katowice, Poland. Contact:
Dr. Danuta Stroz, Institute of Physics and Chemistry of Materials, University
of Silesia, ul. Bankowa 12, 40-007 Katowice, Poland. FAX: 48-32-596929,
e-mail usctoux1.cto. us.edu.pl
3-8 Structural Chemistry Indaba II - Intermolecular Interactions. Kruger
National Park, South Africa. Contact: Lesley Stephenson, Structural Chemistry
Indaba, CEE Conference Office, PO Box 327, Wits University, WITS 2050, South
Africa. tel. +27-11-716-5091, FAX: +27-11-716-7835. Conference WWW page:
http://www.gh. wits.ac.za/indaba. Any emails should be directed to "indaba-org@
hobbes.gh.wits.ac.za".
4 - 14 Sixth Annual ACA Summer Course for Crystallographers. University
of Georgia, Athens, GA. Contact: Prof. Bi-Cheng Wang, Department of Biochemistry
and Molecular Biology, University of Georgia, Athens, GA 30602. tel. (706)
542-1747; FAX: (706) 542-3077.
17 - 21 International Conference on Neutron Scattering. Toronto, Canada.
Contact: P. H. Green, Solid State Division, Oak Ridge National Laboratory,
P. O. Box 2008, Oak Ridge, TN 37831-6033, tel. (423)576-1864, FAX: (423)
574-4143, e-mail phg@ornl.gov. WWW site: http://www.physics.utoronto. ca/icns/icns.html.
SEPTEMBER 1997
8 - 18 Fifth Oxford Summer School on Neutron Scattering, Oxford, England.
Contact Dr. C. J. Carlile, ISIS Pulsed Source, Rutherford Appleton Laboratory,
Chilton, Didcot, Oxon OX11 0QX, England. e-mail: cjc@isis.rl.ac.uk.
20 - 23 III Iberoamerican Congress of Biophysics, Buenos Aires, Argentina.
Contact Dr. G. L. Alonso, Catedra de Biofisica, Facultad de Odontologia,
M T de Alvear 2142, 1122 Buenos Aires, Argentina. e-mail: rtjpaul@criba.
edu.ar.
25 - 28 Fifth Workshop on Powder Diffraction - Ab Initio Structure Determination
of Molecular Solids from Powder Diffraction. Laboratory of Crystallography,
University of Bayreuth, Germany. Updated information is available at: http://www.uni-bayreuth.de/departments/crystal/teaching/workshop.
E-mail: robert. dinnebier@uni-bayreuth.de.
28 - Oct. 1 Eastern Regional Conference on Crystal Growth & Epitaxy - ACCGE/east-97.
Bally's Park Place Hotel & Casino, Atlantic City, N.J. Contact: Rose Scripa,
Univ. of Alabama at Birmingham, Dept. of Materials Engineering, 1150 10th
Avenue S, Birmingham AL 35294-4461. tel. 205-934-8453, fax 205-934-8485,
email rscipa@eng. uab.edu.
OCTOBER 1997
26-29 1997 International Conference on Image Processing, Santa Barbara,
CA. Contact: Prof. B. S. Manjunath, University of California, Santa Barbara,
CA e-mail manj@ece.ucsb.edu, Web site: http://vivaldi.ece.ucsb.edu/ICIP97/icip97.html
JULY 1998
13 - 17 IUPAC Macro 98: 37th International Symposium on Macromolecules.
Contact: Macro 98 Australia, Chem. Department, The University of Queensland,
Brisbane, Queensland 4072, Australia.
19-24 ACA'98 Washington, D.C. Program Chair: Louis Delbaere (univ. of Saskatchewan).
Local Co-chairs: Terrell Vanderah (NIST) and Vicky Karen (NIST).
AUGUST 1998
10-14 IMA'98 17th General Meeting, Int. Mineralogical Assoc., Toronto, Canada.
The meeting will be centered on extensive scientific sessions, preceded
and succeeded by field trips across Canada and the US including important
mineral locations, ore deposits, sites of impact craters, and classic petrologic
localities. Contact: Dr. Eva Schandl, Department of Geology, University
of Toronto, Earth Sciences Centre, 22 Russell St., Toronto, CA M5S 3B1,
e-mail ima98@quartz.geolog. utoronto.ca, Web site: http://www:geology. utoronto.can/IMA98
22-25 6th European Powder Diffraction Conference (EPDIC-6). Budapest, Hungary.
Contact: Prof. Tamas Ungar (chairman), Dept. of General Physics, Eotvos
University, H-1445 Budapest, POB 323, Muzeum krt 6-8, tel./fax (36-1) 2669833,
e-mail: ungar@ludens.elte.hu
May 1999
ACA'99. Buffalo, NY. Local Chair: David Smith (HWI), Program Chair: Steve
Ealick (Cornell).
AUGUST 1999
4 - 13 18th IUCr General Assembly and Intl. Congress of Crystallography.
Glasgow, Scotland. Contact:C. J. Gilmore, Dept. of Chem, U. of Glasgow,
Glasgow G128QQ, Scotland. FAX: 41-330-4418, e-mail iucr99@chem.gla.ac.uk
POSITIONS AVAILABLE
It is expected that the employers listed in this publication are equal opportunity
employers who wish to receive applications from qualified persons regardless
of age, national origin, race, religion, sex or physical handicaps. Please
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experiments, to collect single crystal data and to process the data for
structural determination, with minimal supervision. This position also requires
the direct interaction with crystallographers as well as other personnel
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crystallization strategies for specific macromolecule targets and to communicate
the results of crystallization efforts and structural biology results to
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POSTDOCTORAL POSITIONS
Biophysics, Biochemistry and Biomathematics.: Two NSF-funded fellowships are available immediately for interdisciplinary studies